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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00726 ATGTGTTCAAATCACAGATTCACGGCTAGAAGAGTCTACAGTTCTTGCCAAGATCTTCCCCATCTATCTGCCCATCTCCATTGGACCTACAACGCATCCACGGGCAAAGCCGAGATCGCATACAGAGCGAGACAAGGCTCGTCTGGATGGGTTGCTTGGGCCATCAACCCGAACCAGATAGGTATGGTTGGGTCGGAAGCACTGGTGGCTTTCCGCAATAGTAATGGGAGCATGGCAGTATATCCAACAGTGATAACAACTTACAGCCCATCAATGATGCCTGGAGATCTTAGCTTTAAAGTTTCGGGTCTATCTGCTGAGTACTCAAATAACGAGATTACCATTTATGCTGTTGTGGGACCGTTTGCAGGTGGGTCCCTTGTTAACCAAGTATGGCAAGCTGGGAGCTTGGTTTTGGATGATATCCCTCAAATGCACGCTGTTTCCCAGCAAAATCTTCAATCAACGGGGGAGCTCGATTTCTTATTGGGATAG 495 47.88 MCSNHRFTARRVYSSCQDLPHLSAHLHWTYNASTGKAEIAYRARQGSSGWVAWAINPNQIGMVGSEALVAFRNSNGSMAVYPTVITTYSPSMMPGDLSFKVSGLSAEYSNNEITIYAVVGPFAGGSLVNQVWQAGSLVLDDIPQMHAVSQQNLQSTGELDFLLG 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00726 164 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 2 162 - -
Cati3g00726 164 ProSiteProfiles DOMON domain profile. 22 135 IPR005018 -
Cati3g00726 164 Pfam Protein of unknown function (DUF568) 62 161 IPR045265 -
Cati3g00726 164 CDD DOMON-CIL1-like 13 162 IPR045265 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00726 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:7870635 Cati4g01378 Cati-Chr4:45144482 dispersed
Cati Cati-Chr3:7870635 Cati3g00727 Cati-Chr3:7871962 tandem