AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cati3g00794 | TCATGTAAACTCTCACGCAAGAAAACACAACAACAATGGAGGAAGAACACCACCCACCACCTGCAACCAATCACCCTCACTCCGACATGATCACGGCATTCTCAGAGATAACCTCAGCTTCCAAAGAAGAAGCCACCTTCTTCCTCGAATCGCATAATTTCGATCTCGATTCCGCGGTCTCCACCTTCTTTGAGACCACCGCCGCCGAAGAAGAAGCTCCTCCACCTGGCCGGAACCCTAACCCTTCCGGTACTCATTCCCCTTCCTTCTCTCCCTCCTCTTCCCCGTCCCGCTCCCGATCAGCATCTCCGCCGCCTTCTCTCGGATTACAACAACAAGTGGCCGGTGTTAATCCTTACAATCTACGATCCAGGAATACCGCTGCCGATAAGAAGCCATCCGGTAGTCGCTCCACTGGACGCATACGGACTTTTTCAGATCTGAATCGACCCGGTGATGACTCCGGAAGCGATTCAGATGAACCTCAGGAGTATTATACCGGTGGTGAAAAGAGCGGAATGCTCGTCCAGGATCCATCAAAGGTGAATGATGTGGAATCATTGTTTAACCAAGCTAGACGGGCAGGAGCAGAAGAAGGAACTCTTGATCAACTCCAACCATCTTCAAGCTCCAGAAGCTTTGCTGGAAGAGGAAGACTACTATCTGGAGAGACAACATCAGCTGCTCCTCAGCAGGCTGAACCTGATGTCCACACACACACCATCACTTTCTGGACCAATGGTTTTACCGTAGATGATGGTCCTTTGAGGAGGCTGGATGATCCGCAAAATGCATCTTTCTTGGAGAGCATAAGGAAGTCTGAATGTCCCGAAGAACTTAGGCCTGCAAAAGAAAGAGCTCCGGTCCATGTTAGTCTCGTGAGGAAGTTGGAGGACTACCCTGTCCAAAAACAACGGCGCACGGCCTTTGTGGGTGTGGGTAGAACCCTTGGCACCACCGCATCTTCTGAGGACACGGTTTCCGCCACCCCAGTCCCGGCCTCTACAGCTGCTCCAGCCCCATCCTTAGGCCTCATTGTGGACGACACATTACCTTCCACCTCTATTCAACTGCGACTGGTCGATGGGACCCGTATGGTTTCACGCTTTAATTTCCATCACACAATCAGTGATATACGGTCTTTCATTGATGCATCAAGGCCTGGAGGGCCACGGGCTTATCAGCTGCTGACGATGGGGTTTCCTCCGAAGCAGCTCAACGATTTGAAGCAGACGATTGAAGAGGCGGGGCTAGCGAATTCGGTGGTCATACAGAAACTCTAATACAAATTTGATTTCTACTTCTAAGTTGCTACTAGCTCTTGAATGCTTTACAATTGGGTTCTTTTCAGCTGTGTTTTATACTTTTATTGAAGAATCTTTGCATTGTTAGTTAATCTGTTTGTGGGGAACTGTGGTAATAATGATCAGCCATATATAGCATATATATATATAATGTATGTATGTTCTTGGCTGCATTGTTACCCATACTTGATATTTCAAAAGTGGCATGATGTGGACAAATGAGAACCATGATATAGTGGAACTTTTCTTGTAAACAACTACTAGGATGTTACAAAAGCCACTTGTTAACTTTTAACACAATTACAATTTTAATAATTATATTTTTGTTTGGTTTTAAACCATGCTAATTATGTTATAACCTAGT | 1668 | 46.46 | MEEEHHPPPATNHPHSDMITAFSEITSASKEEATFFLESHNFDLDSAVSTFFETTAAEEEAPPPGRNPNPSGTHSPSFSPSSSPSRSRSASPPPSLGLQQQVAGVNPYNLRSRNTAADKKPSGSRSTGRIRTFSDLNRPGDDSGSDSDEPQEYYTGGEKSGMLVQDPSKVNDVESLFNQARRAGAEEGTLDQLQPSSSSRSFAGRGRLLSGETTSAAPQQAEPDVHTHTITFWTNGFTVDDGPLRRLDDPQNASFLESIRKSECPEELRPAKERAPVHVSLVRKLEDYPVQKQRRTAFVGVGRTLGTTASSEDTVSATPVPASTAAPAPSLGLIVDDTLPSTSIQLRLVDGTRMVSRFNFHHTISDIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLKQTIEEAGLANSVVIQKL | 415 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cati3g00794 | 415 | SUPERFAMILY | Ubiquitin-like | 298 | 413 | IPR029071 | - | |
| Cati3g00794 | 415 | ProSiteProfiles | SEP domain profile. | 225 | 289 | IPR012989 | - | |
| Cati3g00794 | 415 | Pfam | SEP domain | 230 | 303 | IPR012989 | - | |
| Cati3g00794 | 415 | Gene3D | SEP domain | 225 | 287 | IPR036241 | - | |
| Cati3g00794 | 415 | Pfam | UBA-like domain | 17 | 56 | - | - | |
| Cati3g00794 | 415 | MobiDBLite | consensus disorder prediction | 190 | 204 | - | - | |
| Cati3g00794 | 415 | MobiDBLite | consensus disorder prediction | 71 | 133 | - | - | |
| Cati3g00794 | 415 | FunFam | Plant UBX domain-containing protein 4 | 290 | 415 | - | - | |
| Cati3g00794 | 415 | PANTHER | UBX DOMAIN CONTAINING PROTEIN | 15 | 414 | - | GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER) | |
| Cati3g00794 | 415 | SMART | faf-3 | 221 | 315 | IPR012989 | - | |
| Cati3g00794 | 415 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cati3g00794 | 415 | FunFam | Plant UBX domain-containing protein 4 | 225 | 287 | - | - | |
| Cati3g00794 | 415 | MobiDBLite | consensus disorder prediction | 51 | 172 | - | - | |
| Cati3g00794 | 415 | Gene3D | - | 14 | 54 | - | - | |
| Cati3g00794 | 415 | Gene3D | - | 290 | 415 | - | - | |
| Cati3g00794 | 415 | SMART | ubx-3 | 336 | 415 | IPR001012 | GO:0005515(InterPro) | |
| Cati3g00794 | 415 | MobiDBLite | consensus disorder prediction | 184 | 205 | - | - | |
| Cati3g00794 | 415 | ProSiteProfiles | UBX domain profile. | 337 | 414 | IPR001012 | GO:0005515(InterPro) | |
| Cati3g00794 | 415 | SUPERFAMILY | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 221 | 310 | IPR036241 | - | |
| Cati3g00794 | 415 | SUPERFAMILY | UBA-like | 14 | 54 | IPR009060 | GO:0005515(InterPro) | |
| Cati3g00794 | 415 | CDD | UBX-UBXN2 | 343 | 414 | - | - | |
| Cati3g00794 | 415 | Pfam | UBX domain | 340 | 414 | IPR001012 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cati3g00794 | K14012 | UBX domain-containing protein 1 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cati | Cati-Chr3:9065514 | Cati4g01439 | Cati-Chr4:48597292 | dispersed | |
| Cati | Cati-Chr1:87254618 | Cati3g00794 | Cati-Chr3:9065514 | wgd |