AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00797 TAGCATTATTTTTTAGCCCATTGTTTCTCTCTCTCTCTCTCTCTCTAGAATTTGATTTTTGAATTCAAAGAAAGAAAGAATAAACTTTAGGTTTTAGATAGAAACCACATAGAAACAACCTTCTTCTCCAATTGCTCTAGGGTTTCTTCTTATAATCTCTTATCACTTCTCCCATTGAATTCATCATCATCATCATCATCATCAGAGCTGGTTTTCATCATTGATTTCATGTTCTCCAGGTTCTGTTTTCTGTTTTTCTGATTTCAAGCTCTACATGATTCGATTGAAGTTGAAAACCTCCCAAATTTCAATTCATTTCTACTTTCACAGCCTGTAAGCTTACAGAGATTCTGTGTTAAAGGTACGAACTGTTATTTGTTAGGGTTTTGAAATTGATTTTGGAAATGAATGTGGTTTGTTTGGGGTATTTTGAGGTTGAAGCTTTGATTGATTGTGGAAAAAAGGAGTTTTAAGCTTGTTTTTTTTGGGGATATGATTAAGCAAATACTTAATAAGCTTCCTAGGAAGCCATCTTCCAAATCATCATCACACAATGATGAAGGAAACAGTGCAATGGATTCGGCTTCGATAAATTCGAGTGGTGTGGGTGTTAATAATGGCGGTTCTAAGAGCAATTCGGCTAAATCGAATAACGAAACTAGTAAGAAGTTGGGTTCTCTTGGGGGGAATCAAGTGGTGCAGGTATTGAATCATGCTTCTTATGAAGCATTGCCTAGTTTTCGAGTTGTATCTAGTTCGGAAAAACACAACTTATTCATTAAGAAGTTGAATATGTGCTGTGTCGTGTTCGATTTTAGCGATCCATCCAAGAATTCGAAAGAGAAGGATGTTAAGAAACAGACTTTGCTCGAGCTCGTCGATTACGTTTCCTCGGCTACCTCGAAATTCAACGAGGTTACGATGCAGGAAATGACGAAAATGGTGGCTGCTAACTTGTTTCGGGCGTTGCCTAATGCTAACCACGATAACAAGCTGCCGGATTCATATGATCAAGAAGATGATGAGTTTAGTATGGATCCATCTTGGCCACATCTTCAAGTTGTCTATGAGTTCCTTCTTAGGTTTGTAGCTTCATCAGAAACCGATGCTAAACTTGCCAAAAGATATATCGATCATGCTTTCGTGTTGAAATTGCTTGATCTCTTTGATTCTGAGGATCAGAGGGAAAGGGAGTATTTGAAGACGATCTTGCATCGTGTATATGGAAAGTTTATGGTTCATCGCCCGTTCATCAGGAGAGCGATCAACAATATCTTCTATCTTTTCATTTTTGAAACCGGGAAGCACAATGGGATTGCGGAATTGCTTGAGATTTTGGGTAGTATAATTAATGGGTTTGCTTTGCCTTTGAAGGAAGAACATAAGCAGTTCCTTGTTCATGCTTTGATCCCACTTCACAAGCCTAGATGTTTGTCGACATACCATCAGCAACTCTTGTATTGTGTTGGTCAGTTTGTCGAGAAAGATTCTAGGTTGGCGGATACCGTGATTAGGGGATTGCTGAAATATTGGCCCGTAACTAATAGCTCGAAAGAGGTGATGTATCTTAGTGAATTGGAGGAGATTCTTGAAGCTACACAGGCTGCGGAATTCGAACGGTGCATGGTCCCATTGTTCCGCCAGATCGGCTACTGCCTCAATAGTTCACATTTCCAGGTGGCAGAACGTGCGTTGTTCCTATGGAATAACGAGCATATAAGGAATCTAATAACTCAAAACCGCAAAGTGATTCTGCCCATTATCTTCGCACCTTTGGAGAAGAACACACGAGGCCACTGGAACCAAGCCGTTCAAAGCCTAACGTTTAACGTTCGCAAGATATTTTCGGACGCTGACGAACCGCTATTTCAAGAGTGCCTGGTGAAGTACAAACAAGATGAAGCCAAGGAGAAGGAAAGCCTCGCTAAGCGGCAGTCAACCTGGAGCCGCCTGGATACCATAGCTGCCGCTAAAGCTTTGAGCATCGAGTCTGTGGTCATCTCAAGCTTCGCCTCCTCTGTCACCAGCACCACCACCACCGCGGTTTCATGAACAGGTGACGGTTGAATTTATCATCACCTGCATCAATTGATTCATTGACCAAGGTTGACTTTTGCAAAGAGGCACAAGAAGTGAAGAAGTTTGGTGATTGTATCTTATTTTGTTTTTGTTTTTGGTTCATTCCTTGTGTGTTGTATGGTGATGGAGGTGTTTGTGATATAAAGTTGTTGCTTAGAAATGAGATGGGGTTGAGTCTCTATGTTAGTTGATGAATTAGTTATTGGTTTAAGAACTCCAACAGATTTTTAAAATGGAGAAGA 2321 40.46 MIKQILNKLPRKPSSKSSSHNDEGNSAMDSASINSSGVGVNNGGSKSNSAKSNNETSKKLGSLGGNQVVQVLNHASYEALPSFRVVSSSEKHNLFIKKLNMCCVVFDFSDPSKNSKEKDVKKQTLLELVDYVSSATSKFNEVTMQEMTKMVAANLFRALPNANHDNKLPDSYDQEDDEFSMDPSWPHLQVVYEFLLRFVASSETDAKLAKRYIDHAFVLKLLDLFDSEDQREREYLKTILHRVYGKFMVHRPFIRRAINNIFYLFIFETGKHNGIAELLEILGSIINGFALPLKEEHKQFLVHALIPLHKPRCLSTYHQQLLYCVGQFVEKDSRLADTVIRGLLKYWPVTNSSKEVMYLSELEEILEATQAAEFERCMVPLFRQIGYCLNSSHFQVAERALFLWNNEHIRNLITQNRKVILPIIFAPLEKNTRGHWNQAVQSLTFNVRKIFSDADEPLFQECLVKYKQDEAKEKESLAKRQSTWSRLDTIAAAKALSIESVVISSFASSVTSTTTTAVS 519
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00797 519 MobiDBLite consensus disorder prediction 1 62 - -
Cati3g00797 519 PIRSF PP2A-B56 3 518 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cati3g00797 519 MobiDBLite consensus disorder prediction 10 62 - -
Cati3g00797 519 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 87 490 - -
Cati3g00797 519 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 494 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cati3g00797 519 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 80 491 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cati3g00797 519 Gene3D - 88 489 IPR011989 -
Cati3g00797 519 SUPERFAMILY ARM repeat 92 474 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00797 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:9084648 Cati8g01823 Cati-Chr8:14989171 dispersed
Cati Cati-Chr3:9084648 Cati7g03043 Cati-Chr7:66661987 wgd