AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00825 CATTCTCTACTTTTCTTCATCATATTGATTCACACTTTTCGCATTGTTCCTCTCTCAGAAGCAGTAACGCAGCATCTAAGAGAAAACTTGAACTCTTATTGCAGTGTTAAGCATGGGCACCATAATCAAAGTGAGCTTGCTCTTGTTGTTCCTTATCTCACCTACTGCATATTCAGCTTCTACTGGTGGATTGGTTAGAGTTGGACTTAAAAAGAGGAGAGTCAATATACTGAACCAACCTGGTGAACATGCTGGCTCAAATGGAGGGAATGGTAGAAGAAATTATGGTCTACGTGGTAATTTCAGGGGTTCAGACGGTGATGTTATTGCTCTAAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACTCCACCCCAAAAGTTCACTGTGATTTTTGACACCGGAAGTTCTAATCTGTGGGTGCCTTCTTCAAAGTGCTACTTCTCAGTTGCTTGCCTTTTTCACTCCAAATATAAGTCTAGCCATTCAAGTACCTATAATAAAAATGGGACATCCGCTGCAATTCGATATGGAACTGGCTCTATCTCTGGTTTCTTTAGCCAAGATTCTGTCAAACTTGGTGATCTTGTTGTTAAAGAGCAGGATTTTATAGAGGCAACCAAAGAGCCTGGCATCACTTTCTTGGCAGCCAAATTTGATGGTATACTTGGCCTTGGGTTTCAAGAGATCTCTGTTGGGGATGCTGTCCCTGTTTGGTACACCATGGTGAACCAAGGTCTCGTTCAAGACCCTGTATTTTCATTTTGGCTTAACCGCAATGCTGATGAGCAGGAAGGGGGTGAACTTGTGTTAGGTGGGGTTGATCCTAATCATTTCAAGGGTGAACACACATATGTCCCCGTGACTCAAAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCTGATTGGTGACAAAACAACTGGATTTTGCGCCAGTGGTTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGTCCCACGACGGTTGTTACTCAAATCAATCAAGCCATTGGTGCTGCGGGGGTTATGAGTGAACAATGCAAGTCACTGGTTGATCAGTATGGAAAGGCTATCATTGAGATGCTCTTATCTGAGGAGCAACCTGAAAAAATCTGCTCCGAAATGAAGTTATGTTCTTTTGATGGTTCTCATGATACTAGCATGATAATTGAGAGTGTGGTTGACAAGAATAAGGGAAAATCTTCTGGTGTACACGATGGGATGTGTACCTTCTGCGAGATGGCAGTTGTTTGGATGGAAAACCAGATCAGGCAAAACGAGACCGAAGAAAACATAATTAACTATGTTGATAAGCTGTGTGAGCGGTTGCCAAGTCCAATGGGAGAGTCTGCAGTTGACTGTAGCAGTCTTTCCTCCATGCCCAATATTGCATTTACTATCGGTGGTAAAACCTTTGACCTCTCCCCCGAGCAGTATGTCTTGAAAGTTGGGGAAGGAGCAACATCACAATGCATAAGCGGATTCACGGCCATGGATGTGGCACCTCCCCGTGGACCTCTATGGATCTTGGGAGATATTTTTATGGGTCAATACCATACGGTGTTTGACTATGGTAACCTACGAATTGGGTTCGCCAAAGCAGCTTGAGATCTCTCTTTCTGTTGCTCATCATCAGCCTACTACTAGTAATAGTACTTATTTTATGTAAGTAATGTGGCAATAAATGTATGGCATTTATATGAGTTATGGAGCAGGTACATGACTTAAACTCTATGTTTATATACACACAAGGGTTTCTAGCACAGCCACTTCCCTCTTTCAGTCCTTACTATAGCAAACTCCCCAAAATGCCCCTATTTACAACGGTTAGCCTATTCCCGATTTCAAGCTTTGCACGTTGTGTGAACCTTTTCATTGATCGACCGTTTGTCACTTCCGCTTTTGGTAGTACAAACAAGCAACTAAATAGGAAACTTGTTACGGCTTTGAATGTTAACTCTTAACGTATCTAATCAATTTAATCTTCTTATTACC 2017 42.39 MGTIIKVSLLLLFLISPTAYSASTGGLVRVGLKKRRVNILNQPGEHAGSNGGNGRRNYGLRGNFRGSDGDVIALKNYMDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSVACLFHSKYKSSHSSTYNKNGTSAAIRYGTGSISGFFSQDSVKLGDLVVKEQDFIEATKEPGITFLAAKFDGILGLGFQEISVGDAVPVWYTMVNQGLVQDPVFSFWLNRNADEQEGGELVLGGVDPNHFKGEHTYVPVTQKGYWQFEMGDVLIGDKTTGFCASGCAAIADSGTSLLAGPTTVVTQINQAIGAAGVMSEQCKSLVDQYGKAIIEMLLSEEQPEKICSEMKLCSFDGSHDTSMIIESVVDKNKGKSSGVHDGMCTFCEMAVVWMENQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTIGGKTFDLSPEQYVLKVGEGATSQCISGFTAMDVAPPRGPLWILGDIFMGQYHTVFDYGNLRIGFAKAA 505
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00825 505 ProSiteProfiles Saposin B type domain profile. 312 352 IPR008139 -
Cati3g00825 505 Gene3D Acid Proteases 28 240 IPR021109 -
Cati3g00825 505 SMART sapb-4 377 461 IPR008139 -
Cati3g00825 505 SMART sapb-4 276 348 IPR008139 -
Cati3g00825 505 FunFam Vacuolar aspartic proteinase 396 504 - -
Cati3g00825 505 Gene3D - 312 414 - -
Cati3g00825 505 Pfam Saposin-like type B, region 2 316 348 IPR008138 -
Cati3g00825 505 SUPERFAMILY Acid proteases 8 504 IPR021109 -
Cati3g00825 505 ProSiteProfiles Peptidase family A1 domain profile. 82 502 IPR033121 -
Cati3g00825 505 SUPERFAMILY Saposin 313 414 IPR011001 -
Cati3g00825 505 ProSiteProfiles Saposin B type domain profile. 375 416 IPR008139 -
Cati3g00825 505 Pfam Eukaryotic aspartyl protease 81 504 IPR033121 -
Cati3g00825 505 FunFam Lysosomal aspartic protease 68 310 - -
Cati3g00825 505 PRINTS Pepsin (A1) aspartic protease family signature 478 493 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cati3g00825 505 PRINTS Pepsin (A1) aspartic protease family signature 284 295 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cati3g00825 505 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cati3g00825 505 PRINTS Pepsin (A1) aspartic protease family signature 234 247 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cati3g00825 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 284 295 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cati3g00825 505 CDD phytepsin 72 503 IPR033869 GO:0004190(InterPro)
Cati3g00825 505 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 23 504 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Cati3g00825 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 97 108 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cati3g00825 505 Pfam Saposin-like type B, region 1 378 414 IPR007856 GO:0006629(InterPro)
Cati3g00825 505 Gene3D Acid Proteases 241 505 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00825 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
35620 Cati3g00825 Cati7g03003
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr12:38732886 Cati3g00825 Cati-Chr3:9608507 dispersed
Cati Cati-Chr12:38733069 Cati3g00825 Cati-Chr3:9608507 dispersed
Cati Cati-Chr3:9608507 Cati4g01467 Cati-Chr4:50255812 dispersed
Cati Cati-Chr3:9608507 Cati7g03003 Cati-Chr7:66084887 wgd