AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00837 AGCTTCTGGGTTCCAATATACAAGTTGCCCTTTTCTTCCACACGCCCCCTCCCTCCACTCTTTCTTCCAAAATATTCTCTTCTCTTCTCCAATCTCCAATCTCCAATCTCCATTGCTGTGGTTCATGCTTCTGTAATCATCACCATGCCGATAACCGGACCTCATTCTTCAGCTCTTCTCCGTCGAGCTTCTTCTTCTTCTTCTAGGTCCTCCGCCACCACCACCACCAGGCACTTCCACTCTTCTTCACTTTCCGGTAAACCTCCATCACCTTCACCTTCACCACTCGCCTCTCGCTCCCGATCTCATCACGCAACCGCATCCGCCGCTTTCCGCTCTCTCCGATCTCCGTGGAGCCACGGCGTCGATTGGAAGTCTCCTGCTTCTCTCTCTTCTCAGATCAGGACCACTGCTTCTCCTGTCCTTGACCGTTTCCACCGCTCTCTCGCTACTATTGCCTCCAAGAATGTTTTCAATGGGATTTTGACTGGTCTCCCAAAGCCTGGAGGTGGGGAGTTTGGAAAATTCTACAGTTTGCCTGCTCTGAACGATCCAAGAGTTGACAAGCTGCCATATTCGATTAGGATTCTCCTCGAATCAGCAATCCGTAATTGTGACGGTTTCCAAGTCACTAAGGAAGATGTTGAGAAAATCATTGATTGGGAGAAGACTGCTCCAAAGCAAGTTGAGATTCCATTCAAGCCGGCTCGTGTTTTGTTGCAGGATTTTACTGGTGTGCCAGCCGTGGTAGATCTTGCATGTATGCGTGATGCCATGAATAATCTTGGCGGGGACTCTGACAAAATCAATCCTTTGGTTCCTGTGGATCTTGTCGTAGATCATTCGGTTCAAGTTGATGTTGCTAGGTCTGAAAATGCAGTAGAAGCAAATATGGAACTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAGAACATGCTTGTGGTTCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGACGAGTTGTCTTCAACACTGATGGAATGCTCTACCCTGATAGTGTTGTCGGAACTGATTCCCACACTACAATGATTGACGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCCACAATGCTTGGGCAGCCAATGAGCATGGTTTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGGAAACTGCGCAATGGTGTAACAGCTACCGATTTGGTTTTGACCGTCACCCAAATGTTAAGGAAGCATGGTGTCGTAGGCAAATTTGTTGAATTCCACGGGGAGGGTGTGGGTAAAATATCACTTGCTGACAGGGCTACTATAGCCAACATGTCTCCCGAATATGGTGCAACAATGGGGTTCTTCCCAGTGGATCATGTTACTCTTCAGTATCTCAAATTAACTGGACGAAGTGATGATACGGTTGCTATGATCGAAGCGTACTTACGTGCAAACAATATGTTCGTCGATTATAATGCGCCACAACAAGACAGAGTCTACTCATCATACTTGGAGCTAGATCTTTCAGATGTAGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGAGTCACTTTGAAAGACATGAAAGCAGATTGGCATTCTTGCTTGGATAATAAAGTCGGATTCAAAGGTTTTGCTGTACCAAAGGAGGCACAAGACAAAGTTGCAAAATTTTCTTTTCATGGACAGCCAGCAGAGCTTAGGCATGGCAGTGTTGTGATTGCTGCTATCACAAGCTGCACAAATACATCAAACCCTAGTGTTATGCTTGGGGCAGGTCTTGTTGCAAAGAAAGCCTGTGAATTGGGCCTAAAGGTCAAACCATGGGTTAAAACAAGTCTTGCTCCAGGATCTGGAGTTGTTACAAAATATTTGCTCCAAAGTGGGTTGCAGAAGTATTTGAATGAGCAAGGTTTCAACATTGTTGGATATGGCTGCACAACATGTATTGGCAATTCAGGGGAATTGGACGAGTCTGTTGGTGCCGCTATAACTGAAAATGACATCATTGCCTCAGCTGTTCTCTCTGGGAACCGAAACTTCGAGGGGCGTGTTCATGCCTTAACGAGAGCAAACTATCTTGCATCACCCCCTTTGGTTGTTGCTTATGCACTTGCTGGCACGGTTGACATTGATTTTGATAAGGAACCAATTGGGGTTGGAAAAGATGGAAAGGACGCTGTTCAATCGAGTGTTCTCCCCGCCATGTTTAAGAGCACTTATGAATCCATCACTCAGGGAAATCCCATGTGGAATGACCTATCAGTCCCTGAATCTAAGCTATACTCATGGGATACAAACTCTACCTACATTCATGAGCCACCATATTTCAAAAACATGACAATGGACCCCCCTGGGGCCCACGGTGTGAAGGATGCCTATTGCTTGCTGAACTTCGGTGACAGCATCACAACGGATCACATTTCGCCCGCAGGAAGCATCCACAAGGACAGCCCAGCTGCAAAGTTTCTTCTTGAACGTGGTGTTGATCGCAAGGACTTCAATTCTTATGGCAGTCGTCGAGGTAATGATGAAATTATGGCAAGGGGTACTTTTGCCAATATCCGCCTCGTCAACAAGCTCTTAAATGGGGAAGTTGGCCCAAAGACCATACATAAATACAAAGCTGCTGGTCAGGATACAATTGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGCTCCAGAGATTGGGCTGCCAAGGGTCCCATGTTATTGGGAGTTAAAGCGGTAATTGCAAAAAGCTTTGAGAGGATTCATCGCAGTAATTTGGTGGGAATGGGCATTATACCACTTTGCTTCAAAGCTGGTGAGGATGCCGACACACTACAGTTGACCGGTCATGAACGATACACCATTGACCTACCAAGCAACATTAGTGAGATCCGGCCTGGTCAAGATGTCAATGTCAGCACCGACACCGGAAAGTCCTTCACGTGTACTGTCCGCTTTGACACCGAGGTGGAATTGGCTTATTTCAATCATGGTGGCATCCTTCCATATGTTATCAGACAACTATCAGCACAGAAATGATGTGGTACTTACCGGAGAGAGTTTTAAGGTTAATTCAATTGTACAATTTGAGCAAACTCAAAAATAAAAATGTATGATTTGTTGCATATCATCAAGGGAATGGAATTTTGACAATTATTGTAATAATTTCCATGCTATTTATTTCCTTTGATTTTTATGGGGAAGATAGATATCTCAACTGATTTACACACAGGATAAATTTATTTGTATTTGCTCTAATTTTTGTTTTGCAATCCAGAGGGATTTATGGAAACCATTTAATATCATGACGACTTGTATTATTTTTTTTGGAAGGCAATAT 3367 44.73 SFWVPIYKLPFSSTRPLPPLFLPKYSLLFSNLQSPISIAVVHASVIITMPITGPHSSALLRRASSSSSRSSATTTTRHFHSSSLSGKPPSPSPSPLASRSRSHHATASAAFRSLRSPWSHGVDWKSPASLSSQIRTTASPVLDRFHRSLATIASKNVFNGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDGFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSDKINPLVPVDLVVDHSVQVDVARSENAVEANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGEGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNAPQQDRVYSSYLELDLSDVEPCISGPKRPHDRVTLKDMKADWHSCLDNKVGFKGFAVPKEAQDKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAITENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFDKEPIGVGKDGKDAVQSSVLPAMFKSTYESITQGNPMWNDLSVPESKLYSWDTNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVNVSTDTGKSFTCTVRFDTEVELAYFNHGGILPYVIRQLSAQK 1021
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00837 1021 ProSitePatterns Aconitase family signature 1. 584 600 IPR018136 -
Cati3g00837 1021 MobiDBLite consensus disorder prediction 60 87 - -
Cati3g00837 1021 FunFam Aconitate hydratase 796 1019 - -
Cati3g00837 1021 PRINTS Aconitase family signature 523 537 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 588 599 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 650 663 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 298 311 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 441 454 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 365 380 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 322 330 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 351 364 IPR001030 -
Cati3g00837 1021 PRINTS Aconitase family signature 427 440 IPR001030 -
Cati3g00837 1021 SUPERFAMILY Aconitase iron-sulfur domain 170 769 IPR036008 -
Cati3g00837 1021 Gene3D Aconitase, domain 4 797 1019 IPR015928 -
Cati3g00837 1021 NCBIfam aconitate hydratase AcnA 174 1017 IPR006249 -
Cati3g00837 1021 MobiDBLite consensus disorder prediction 60 102 - -
Cati3g00837 1021 Pfam Aconitase family (aconitate hydratase) 216 719 IPR001030 -
Cati3g00837 1021 CDD AcnA-IRP-Swivel 810 966 IPR044137 -
Cati3g00837 1021 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 155 1018 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Cati3g00837 1021 Pfam Aconitase C-terminal domain 833 947 IPR000573 -
Cati3g00837 1021 Gene3D Aconitase, domain 3 158 523 IPR015931 -
Cati3g00837 1021 FunFam Aconitate hydratase 156 523 - -
Cati3g00837 1021 CDD AcnA-IRP 237 721 - -
Cati3g00837 1021 ProSitePatterns Aconitase family signature 2. 650 663 IPR018136 -
Cati3g00837 1021 Gene3D Aconitase, domain 3 524 762 IPR015931 -
Cati3g00837 1021 FunFam cytoplasmic aconitate hydratase 524 747 - -
Cati3g00837 1021 SUPERFAMILY LeuD-IlvD-like 773 1016 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00837 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
35625 Cati3g00837 Cati7g02992
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:9992570 Cati7g02992 Cati-Chr7:65868567 dispersed
Cati Cati-Chr3:9992570 Cati3g00837 Cati-Chr3:9992570 tandem
Cati Cati-Chr3:9992570 Cati3g00838 Cati-Chr3:9992570 tandem