AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00999 ATGGGAGCTCATGTTAGCAAGAAATCAACTGCTGCTACCTCCTCCGTTTCACCTGCTATGTCTTTGAAAGATACCCAACAAATCATCACAGAGCTTAATGCATATGAAGCTGCCTGCAGATCAGATGCTGATTTGCAATCTTTCGATACTATGCTCCATGCTCGGGCTAATAACGTAATCAATACTTTGGCTGTGGGTGTTGAAGTTCGGGCTTTATCTTTCGATACCCTAAAAGAAGTTACAGAGTGTTTGTTGGAAATGAATCAAGAAGTTGTGAAGGTGATATTGCATTGCAAGAAAGATATCTGGAAGAATCAAGAATTGTTTGAATTGGTGGAGGAATATTTCGAGAATAGCCTTCAAACGCTTGATTTCTGTGCAGCGTTGGATAAATGCTTGAAGAGGGTGCGAGATAGCCAGCTGATGATTCTTGTGGCTTTGCAGCATTTTGATGAGGATGAAGGTGTGGAGGAAAATAGGTATGAAAAGACCCTTGAAGATCTGAAGAACTTCAAGGATGCTGGTGATCCGTTCACCGAAGAATTCTTCAAGATATTTCATTCGGTATACAGACAACAAATGGCGATGCTTGACAAGCTACAAGCCAAGAAAACAAAGCTGGACAAGAAAGTGAAGTACGTTCAGACATGGAGGAAAGTGTCATCTGTCATCTTTGTGGCTACTTTTGCAGCTGTTTTGATATGCTCTGTGGTGGCAGCGGCCATAGCTGCACCGCCTGTGGCCGCAGCGCTTGCTGCTGCCGCTGCGATCCCTCTTGGTTCGATGGGGAAGTGGATCAACTCCCTTTTGAAAAACTATGAAAACGCGATTAAAGGGCAAAAGGAGGTCATAAGCTCTATGCAAGTAGGGGGTTATGTGGCTATCAGGGATCTTGATACGATTCGGGTTCTTGTGGATAGGCTTCAAATGGATATAGAGGAGCTGATGAGGAAGGCTGAGCATGTGATTGAGGGAGGAGATGAAATGGTGAAAATTGCAATTGAAGAGATCAAGTTAAAACTGAATTCATTTATGAAGAATGGATGCAGGCCGATAATTGCAGCCGTGATGTTAGACGAGCTAGGACCGTTGTCTTGCAGAGGATCATCAAGCCACCACATCATCAATGAAAGCTCCTATACTCTGATGTACAAGAGTATGGAGACGAAGGTTAGAATCCATGAGGATTGGAGGATAGTAGGGTCAAAATCTATGGTGGTGGTTCCTGGCAGTAAAGGAGGGTGCGCGGATACGGCTGATACGGTGGTGCTCGCCACCCACATGTTCTTATGTTACTTGAATTCAAGATTCTTCTATTTTATCATTATCAAAGAAAAGAGTATTTAATAGATTCAATAATAGACAGAATTACCATAACTGTCGATGTGAATAAAAACCTTGTAAGATTCATTCTTTTATACCCTATTCCTTTAGTCTCTCTTCTCCATGATTCAATATTCATTACATTATATTTCT 1476 42.07 MGAHVSKKSTAATSSVSPAMSLKDTQQIITELNAYEAACRSDADLQSFDTMLHARANNVINTLAVGVEVRALSFDTLKEVTECLLEMNQEVVKVILHCKKDIWKNQELFELVEEYFENSLQTLDFCAALDKCLKRVRDSQLMILVALQHFDEDEGVEENRYEKTLEDLKNFKDAGDPFTEEFFKIFHSVYRQQMAMLDKLQAKKTKLDKKVKYVQTWRKVSSVIFVATFAAVLICSVVAAAIAAPPVAAALAAAAAIPLGSMGKWINSLLKNYENAIKGQKEVISSMQVGGYVAIRDLDTIRVLVDRLQMDIEELMRKAEHVIEGGDEMVKIAIEEIKLKLNSFMKNGCRPIIAAVMLDELGPLSCRGSSSHHIINESSYTLMYKSMETKVRIHEDWRIVGSKSMVVVPGSKGGCADTADTVVLATHMFLCYLNSRFFYFIIIKEKSI 448
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00999 448 Coils Coil 298 318 - -
Cati3g00999 448 Pfam Protein of unknown function (DUF677) 45 346 IPR007749 -
Cati3g00999 448 Coils Coil 190 210 - -
Cati3g00999 448 PANTHER UPF0496 PROTEIN 3-RELATED 14 346 IPR007749 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00999 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:13929592 Cati8g02099 Cati-Chr8:17281824 dispersed
Cati Cati-Chr3:13929592 Cati11g00582 Cati-Chr11:6358834 transposed