AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g01001 CACAACTGCAATCTTCCTTCTAGTGAAACTAACCATAAACAAGAAGATATCACCCGTTAGCGCGCTTTCTCTCTCCTCTCTCTCTCTCTCTCTCTCACACACACACAAACACACACTGACACACATTCTCAAATTCAATTTTGATCAGAAGCAATTAATGGAGCTCCGATCAATTCAATCGCCAGTCGTTAGTAGTCTAGCTACACAAGGCCTTATTGAAAAGCAGCAACTCATATGCTATCGCCACCTTATCAGATCCTTTGGTACCAAGAGAATTCTTCACTCAAGTTCTATCAAGCTTAGACCTGTTCGATTCAAGCCTCAAGCCTCAAGTGCAACGAGAACAGGTTCACAGCCTGCTGACACGATTTCAAAAGATGGTGAGAAAGACGGAAATCTCATCTTTGTTGCAGGAGCGACCGGCAAAGTTGGTTCGCGAACAGTAAGGGAGCTTTTGAAATTAGGATTTAACGTTCGAGCTGGTGTGCGAAGTACTCAAAGAGCAGAAGCTTTGGTGAAAAGCGTGCAGCAGATGAAACTTGATGAAGCATCATCTGATGGAAGTCAGCCTATAGAGAAGCTTGAACTTGTGGAGTGTGACTTGGAGAAACCAGAGCAGATTAAGCCGGCATTGGGCAGGGCTTCAACAGTTATATGCTGCATTGGGGCTAGCGAGAAGGAGATATTTGATGTTACTGGACCATACCGAATTGATTTTCAAGCCACAAAAAATCTTATTGATGCAGCTACTGCTTCAAAAGCGAAACAATTTTTTTTGGTTACTTCTTTGGGAACAAACAAGTTTGGCTTTCCTGCTGCTGTATTGAATTTGTTCTGGGGAGTCCTATGCTGGAAAAGGAAGGCTGAAGAAGCACTGATTGCTAGTGGGATTCCTTACACTATAGTGAGACCTGGAGGAATGGAGCGTCCTACGGATTCTTTCAAGGAAACTCATAATCTTGCCCTCTATACAGAAGATACTTTATTTGGTGGTTTAGTATCGAATCTTCAGGTGGCAGAACTCCTTGCCTTCATGGCCAAAAACCCTACTCTCTCTTATTGTAAAGTTGTGGAAGTAATTGCAGAAACAACAGCACCATTGACCCCCATGGGGGATCTCCTAGCAAAAATACCACCTCAACGTGCTCCACCCAAGGCACCAGAAGCTATCAAAGAACCTGAGCCTGTCCCCAAGAGCACCAGTTCTGAGAGTCCAAGCATTGTCGCTGAAACACAATCCCACTATGAAGGTTTGAAACCTCCTGTATCCCCGATTCCAACTGCACCTGGTGGCAGTAAGGTAGTAGTAGAAGCAGTATCTACTTCTGCTGATTCTGGAACCACCACAATCTATGAAGGTTTGAAACCTCCTGTATCCCCGATTCCAACTGCACCTGGTGGCAGTAAGGTAATAGTAGAAGCAGTATCTACTTCTGCTGATTCTGGAACCACTACAATGTCAGAAATCACCACAACTTCAGAAACAATAGCTGTTACAGCTGAACCTGCACCAGTGGCCGTAGGATTGCAAACAACCAGGCCTCTCTCTCCTTATGCTGCTTATGAGAACCTGAAGCCACCTACCTCTCCAACCCCGACACCAAGTGGATCCAAAGCGACACCGTCTAGTTCCTCTGCTACACCAGAAATTGCAACAGAACCCACTACAAGCATTGATACCATTGTGGAGGTTGAAGATGGTGACAACGGGTCTCCTATTGCTTCCACACCGGAGAACACCTCAGCTAGCACTGTAGTGAAGCCAAGGCCACTTTCACCGTACCCCATGTATGAAAACTTGAAGCCTCCAAGTTCTCCTATCCCTTCCACCCCTCAATAAGTGATGAGTGGTATGAATTCAGATTTCTTCTGTTAAAGATGGAAACTGAGTTGAGGAGATGTGACATAAGTATACATGTATAGTAGATCCGGAATGTAAAATGAGCTTTTGAGGCATATTTAGGCAAACAATCGAATTTCACCCCATTTTTTCATTGTAATATTGAAATCGGTATGCATACATCTATGGATCATTTCACTTCCAATGCATTGAAGTTTAAAACCATGCAAATGTATTGACACTTACAGGTAACGGAAAGCTAGTCTCGTCCATTAATCCAAGCTTTTCT 2129 44.01 MELRSIQSPVVSSLATQGLIEKQQLICYRHLIRSFGTKRILHSSSIKLRPVRFKPQASSATRTGSQPADTISKDGEKDGNLIFVAGATGKVGSRTVRELLKLGFNVRAGVRSTQRAEALVKSVQQMKLDEASSDGSQPIEKLELVECDLEKPEQIKPALGRASTVICCIGASEKEIFDVTGPYRIDFQATKNLIDAATASKAKQFFLVTSLGTNKFGFPAAVLNLFWGVLCWKRKAEEALIASGIPYTIVRPGGMERPTDSFKETHNLALYTEDTLFGGLVSNLQVAELLAFMAKNPTLSYCKVVEVIAETTAPLTPMGDLLAKIPPQRAPPKAPEAIKEPEPVPKSTSSESPSIVAETQSHYEGLKPPVSPIPTAPGGSKVVVEAVSTSADSGTTTIYEGLKPPVSPIPTAPGGSKVIVEAVSTSADSGTTTMSEITTTSETIAVTAEPAPVAVGLQTTRPLSPYAAYENLKPPTSPTPTPSGSKATPSSSSATPEIATEPTTSIDTIVEVEDGDNGSPIASTPENTSASTVVKPRPLSPYPMYENLKPPSSPIPSTPQ 560
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g01001 560 Gene3D - 80 326 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 465 560 - -
Cati3g01001 560 Pfam NAD(P)H-binding 86 297 IPR016040 -
Cati3g01001 560 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 506 IPR044719 -
Cati3g01001 560 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 327 IPR036291 -
Cati3g01001 560 FunFam Protein TIC 62, chloroplastic 78 328 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 328 353 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 53 74 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 56 70 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 520 535 - -
Cati3g01001 560 CDD SDR-a5 82 311 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 483 507 - -
Cati3g01001 560 MobiDBLite consensus disorder prediction 543 560 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g01001 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:13938650 Cati3g01004 Cati-Chr3:13954284 dispersed
Cati Cati-Chr3:13938474 Cati3g01001 Cati-Chr3:13938650 tandem
Cati Cati-Chr3:13938650 Cati3g01002 Cati-Chr3:13938807 tandem