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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g01018 ATGGTGGTGGAGAGAGTGATACTGGAATCTGGAGGGGTGAAATCTCTAATCGGATGCTTACATGGTATCTCCGAGATCCACAAAGCAAAGAAGCAATTGGAAGGGTCAAACAAGAATAATAATAATAATAATGATCATAATTTAAAGTCGGAGGAGAATAGAGCAGCAATTGGAATTGGAAGTGAAAGAACATGTCCTATCCCGGATGGAGGAGTACCGAAGGGCCGTGAAGAGATGGAGGAAGAAGAGAAAGCGAAGATGCCCGACTCCGATTTCACGAGATTGCTTCGCTCAAAAGGAAAGCTCCCTGCT 312 44.23 MVVERVILESGGVKSLIGCLHGISEIHKAKKQLEGSNKNNNNNNDHNLKSEENRAAIGIGSERTCPIPDGGVPKGREEMEEEEKAKMPDSDFTRLLRSKGKLPA 104
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g01018 104 PANTHER CCG-BINDING PROTEIN 1 3 104 IPR037502 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0010183(InterPro)|GO:0036033(PANTHER)|GO:0036033(InterPro)
Cati3g01018 104 MobiDBLite consensus disorder prediction 73 96 - -
Cati3g01018 104 MobiDBLite consensus disorder prediction 31 104 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g01018 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
35668 Cati3g01018 Cati5g01315
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:14264813 Cati3g01018 Cati-Chr3:14266407 dispersed
Cati Cati-Chr3:14266407 Cati5g01315 Cati-Chr5:15585649 dispersed
Cati Cati-Chr3:14264813 Cati3g01018 Cati-Chr3:14266407 proximal