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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g01023 ATGTCGAAGAAGAGGGAGGTTGCAGGTGGCCATGGTGGAGGTTCTGGAAGGAGATCGGAGTTGACATCGGCGAGATCGGAGTTGCTTTTGCATGCTGTGGCCGGAGAAGAAGAGGAAGGGGAGGAAGGGAGAGAAGAAGAGGTTGGGGTGGCGGTTTACGGCGGCTCGGAGAGGCGGTGGGTCGCCGGAAAAGGTCGCCGGAAGAAGAAGAGGCTCGGAGAGGCGATGGGGAGCTTTAACTTTACTTCCTCCCCTGAACTAACCTTGGATCTCAATCCAACTTTTATCCCCAAAACAATCTCTCACTTTCTTGGAGGAATCTCCACAATCAGTGACAAGCTATTGCAGGTTGATGATTTCCTTCACCGATTAGAAACTGAAACTCTCAAAATCCAAGCATTCAAACCCCAACTCCCTCTATGCATGCTCCTCATCAATGATGCAATTGTTGCATTGAAAGAGGTTTCAATGGTGTTAAAGAAATCATCAACTGCTGATCAGCCTGTACTTGAAGAATTTATACCACTCAAGAACACTTGTCATGATGATGATGATGATGCAAAGGCTGAAATCATGATAAGAAAGGACAGTGGTGATAAAAAGAATTGGTTGAGCTCCACACAGCTTTGGAACACCAATGAGAACATCATCCAGAAACCAGATGCAACAATTAAAAAGGGAACTGAGAAAGAAGATTGTGGGAAAGGATTTTTCTTCCCTGAAATCAAGAATCCAATGAGGGAAAATGGTTTGGTTACTGAAATCAATTGTGACACTAGATTGACACCAAATGTTGAATCAAACATACACCCTCTGCCACCACACCAGCAGACATCATCTAGGAAACAAAGAAGATGCTGGTCCACGGAGTTGCATCGACGATTTCTCAACGCCTTGCAACAACTTGGAGGCTCACATGCAGCCACCCCTAAGCAGATTCGCGAGCTTATGCAAGTAGATGGTCTCACCAACGACGAAGTGAAGAGCCATTTGCAAAAATACAGGCTTCATACACGACGGCTTCCGTCTTCAAACACAAATCTAGCAGGTGCTGTTTTGGGTGGCGGTCTATGGATGCCGCCACAAGATCAGTATGTTGTTGGATCCTCCAAATGTAGCAATTCTCAATCGGGTTCTCCCGATGGCCCCCTCCGCAACACCATGGACGACGAAGAAGATGAGAAATCGGAGAATTATGGCTGGAATGGAAAAGAAAGACAAAGGGCAAATGTGTCAACTTTAGGCTTCAAGATGCCCTTCTTGGCTAAAAGTCCAATAGACCACCAAAAGTTTAAAACTCTTCAAAAATGA 1311 45.69 MSKKREVAGGHGGGSGRRSELTSARSELLLHAVAGEEEEGEEGREEEVGVAVYGGSERRWVAGKGRRKKKRLGEAMGSFNFTSSPELTLDLNPTFIPKTISHFLGGISTISDKLLQVDDFLHRLETETLKIQAFKPQLPLCMLLINDAIVALKEVSMVLKKSSTADQPVLEEFIPLKNTCHDDDDDAKAEIMIRKDSGDKKNWLSSTQLWNTNENIIQKPDATIKKGTEKEDCGKGFFFPEIKNPMRENGLVTEINCDTRLTPNVESNIHPLPPHQQTSSRKQRRCWSTELHRRFLNALQQLGGSHAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSSNTNLAGAVLGGGLWMPPQDQYVVGSSKCSNSQSGSPDGPLRNTMDDEEDEKSENYGWNGKERQRANVSTLGFKMPFLAKSPIDHQKFKTLQK 436
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g01023 436 Gene3D - 281 339 - -
Cati3g01023 436 MobiDBLite consensus disorder prediction 368 383 - -
Cati3g01023 436 MobiDBLite consensus disorder prediction 385 402 - -
Cati3g01023 436 Pfam Myb-like DNA-binding domain 284 335 IPR001005 -
Cati3g01023 436 SUPERFAMILY Homeodomain-like 280 340 IPR009057 -
Cati3g01023 436 MobiDBLite consensus disorder prediction 28 47 - -
Cati3g01023 436 MobiDBLite consensus disorder prediction 1 23 - -
Cati3g01023 436 FunFam Myb family transcription factor 281 339 - -
Cati3g01023 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 279 339 IPR017930 -
Cati3g01023 436 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 337 IPR006447 GO:0003677(InterPro)
Cati3g01023 436 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 98 398 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cati3g01023 436 MobiDBLite consensus disorder prediction 368 406 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g01023 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
35669 Cati3g01023 Cati5g01299
35670 Cati3g01023 Cati7g02887
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:14391672 Cati7g02887 Cati-Chr7:64221540 dispersed
Cati Cati-Chr11:5579706 Cati3g01023 Cati-Chr3:14391672 wgd
Cati Cati-Chr3:14391672 Cati5g01299 Cati-Chr5:15435190 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cati10g00081 . 6 178 G2-like Transcription Factor family AT2G01060 49.425 2.88e-52 169.0
Cati10g00247 . 1 334 G2-like Transcription Factor family AT3G10760 53.687 1.96e-87 262.0
Cati10g00466 . 168 345 G2-like Transcription Factor family AT5G06800 57.214 1.51e-62 204.0
Cati10g00685 ACH 1 312 G2-like Transcription Factor family AT3G46640 47.246 2.77e-78 240.0
Cati10g00798 . 44 344 G2-like Transcription Factor family AT2G40260 38.264 2.25e-38 140.0
Cati10g01041 ACH 1 367 G2-like Transcription Factor family AT4G28610 48.214 5.17e-101 305.0
Cati10g02144 . 7 187 G2-like Transcription Factor family AT2G01060 47.514 3.53e-54 174.0
Cati10g02803 ACH 44 173 G2-like Transcription Factor family AT2G40260 62.879 1.73e-46 162.0
Cati10g03336 . 8 337 G2-like Transcription Factor family AT5G29000 45.509 6.54e-77 242.0
Cati11g00526 . 9 240 G2-like Transcription Factor family AT1G13300 26.18 5.60e-15 75.1
Cati11g00527 . 175 255 G2-like Transcription Factor family AT1G49560 42.683 4.12e-14 70.5
Cati11g02989 ACH 175 354 G2-like Transcription Factor family AT1G32240 60.622 2.17e-61 199.0
Cati11g03481 ACH 1 276 G2-like Transcription Factor family AT3G24120 48.951 2.48e-71 227.0
Cati12g00045 . 19 272 G2-like Transcription Factor family AT5G16560 44.656 9.15e-40 142.0
Cati12g01176 . 51 172 G2-like Transcription Factor family AT2G40260 56.429 1.78e-39 142.0
Cati12g02173 ACH 1 312 G2-like Transcription Factor family AT3G46640 44.611 1.26e-69 217.0
Cati1g00945 . 1 403 G2-like Transcription Factor family AT5G16560 34.845 3.63e-51 177.0
Cati1g00946 . 1 403 G2-like Transcription Factor family AT5G16560 41.841 1.48e-76 243.0
Cati1g00947 . 1 371 G2-like Transcription Factor family AT5G16560 41.216 7.44e-65 211.0
Cati1g03183 . 5 257 G2-like Transcription Factor family AT2G01060 71.984 9.96e-110 338.0
Cati2g00538 ACH 1 386 G2-like Transcription Factor family AT1G32240 49.165 2.89e-86 265.0
Cati2g00567 . 1 245 G2-like Transcription Factor family AT5G45580 52.549 4.77e-76 230.0
Cati3g01023 ACH 1 317 G2-like Transcription Factor family AT2G03500 38.393 2.23e-53 182.0
Cati3g03544 ACH 196 386 G2-like Transcription Factor family AT1G32240 60.5 6.84e-59 193.0
Cati4g01302 . 28 201 G2-like Transcription Factor family AT3G24120 49.718 4.05e-45 150.0
Cati4g01303 . 5 257 G2-like Transcription Factor family AT2G01060 66.667 2.73e-101 301.0
Cati4g01304 . 5 257 G2-like Transcription Factor family AT2G01060 66.667 5.42e-101 299.0
Cati4g01943 . 42 143 G2-like Transcription Factor family AT2G42660 44.037 4.35e-19 85.1
Cati4g02906 ACH 21 82 G2-like Transcription Factor family AT2G02060 85.484 4.34e-32 119.0
Cati4g02979 ACH 2 324 G2-like Transcription Factor family AT1G25550 50.0 2.46e-106 315.0
Cati4g03174 . 25 330 G2-like Transcription Factor family AT1G69580 48.22 2.09e-75 232.0
Cati4g03175 . 25 330 G2-like Transcription Factor family AT1G69580 48.22 2.09e-75 232.0
Cati5g01299 ACH 6 314 G2-like Transcription Factor family AT2G03500 38.439 2.37e-56 189.0
Cati5g02387 . 8 417 G2-like Transcription Factor family AT2G20570 50.114 9.30e-99 301.0
Cati5g03556 . 1 432 G2-like Transcription Factor family AT2G03500 46.899 4.84e-125 370.0
Cati6g00625 ACH 3 401 G2-like Transcription Factor family AT5G18240 47.129 6.68e-108 320.0
Cati6g01017 ACH 1 276 G2-like Transcription Factor family AT3G24120 63.918 3.67e-122 351.0
Cati7g00699 ACH 1 326 G2-like Transcription Factor family AT1G25550 38.325 2.35e-66 213.0
Cati7g00865 ACH 1 75 G2-like Transcription Factor family AT1G14600 70.667 2.65e-32 113.0
Cati7g02887 ACH 12 319 G2-like Transcription Factor family AT4G37180 36.053 3.28e-52 176.0
Cati7g03561 . 14 185 G2-like Transcription Factor family AT3G12730 61.047 3.30e-62 200.0
Cati7g03563 . 14 185 G2-like Transcription Factor family AT3G12730 59.884 3.23e-62 201.0
Cati7g03562 . 14 185 G2-like Transcription Factor family AT3G12730 59.884 3.23e-62 201.0
Cati8g00477 ACH 45 344 G2-like Transcription Factor family AT2G40260 38.614 3.66e-47 164.0
Cati8g03198 ACH 18 401 G2-like Transcription Factor family AT5G18240 45.477 6.96e-97 291.0
Cati9g01201 . 67 263 G2-like Transcription Factor family AT5G42630 46.058 8.25e-53 174.0
Cati9g02646 . 17 206 G2-like Transcription Factor family AT5G42630 46.04 3.85e-40 136.0
Cati9g03352 ACH 105 376 G2-like Transcription Factor family AT4G28610 54.874 3.63e-92 285.0
Cati9g03899 ACH 1 312 G2-like Transcription Factor family AT3G46640 51.156 1.73e-82 253.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cati Myb_DNA-binding 7.9e-07 CL0123 TF GARP-G2-like