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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g01040 GGACGATTTTGATTAAATTGCATCAATTCTTTAATTTTTTTGTCGAGAAACGATGAATTAATTAATTTATGAAATTGAACTAATTCCACCATTTTTATTATATGAACCAAGAGAATATTAAACTACAAATCAACCACCATCGTTATCAATTATCATCTAGAAAGAAGGATGAAGTAAAACAGAGGTTTGCCCCCATCCATCGACCCATGACCACTCACTCCAATAATCATCCGGCAATGGAATCTACCCAACATGAGATCCTCCATGACTTCCACCCTATTCTCCGTGTCTACAAAGACGGCCACGTCCACAAAATGACCACCACCCCCATCCTCCCTCCCTCCGACGATCCCCAAACCACCGTCCGATCTAAGGACGTCGTCATCTCCGCCCACCCTAAAGTCGCCGCCCGCCTCTACCTCCCCAAAACCACCACCACCAAACTCCCGCTCCTCATCTACATCCATGGCGGCGCTTTCGCCATCGAATCCGCCTTCTCCACCCTCTACCATAACCACCTTAACACCCTCACCGCCGCCGCCAATGTCGCCGCCGTCTCCATCGAGTACAGGCTAGCCCCAGAACACCCAATCCCAGCTTGCTATGATGACTGCTGGGAGACCTTGAAATGGGTTTTGGATACACAAGATCCATGGATCAGAAACCACGCGGATCTGAGTCGGGTCTTCTTGGCTGGCGATAGTGCCGGAGCCAACATCGCGCATAACGTCATGGTTCGGTTCAGCGAAAACGGGGCTGGATCGGGTTTGAAGCAAGGGCGAATCTATGTAGAGCCTCGATTCGCCACTGGTTTGAAGATCATGGGGATGGCTTTGATTCATCCGTTTTTCTCTTTCGACGAAGAGGATAAACTGTGGATGTATCTTTGCCCGGGTACAAGCGGGTTGGATGATCCGAGAATGAACCCGGCAGCGGATCCGGGATTGCTGGCAAAGATGGTGTGTGAGAAGGTGGTGGTGTGTACTGCTGGGAAAGATCATCTGAGAGATAGAGGGTGGAGTTATTATGAAGCATTGAAGAAGAGTGGGTGGGGAGGGCAGTTGCAGATTATGGAAAGTGAAGATGAAGAACACTGCTTTCACTTGTTTAATCCAACTTGTCAGCGAGCACAAGCACTTAACGTCGCCGGTCCTATTTCCGGCCACACCACCTCCGGCATCCACCTTCGTCTCCGGCACCCACCTTCGTCTCCGCCGTCGGATTCTGGACCACCGCTGCCGGAGCTGGACCAGAGGCCACGACAGAGTCGTCGAAGAAGACGAAGTGATTGGGGATGA 1298 50.69 MNQENIKLQINHHRYQLSSRKKDEVKQRFAPIHRPMTTHSNNHPAMESTQHEILHDFHPILRVYKDGHVHKMTTTPILPPSDDPQTTVRSKDVVISAHPKVAARLYLPKTTTTKLPLLIYIHGGAFAIESAFSTLYHNHLNTLTAAANVAAVSIEYRLAPEHPIPACYDDCWETLKWVLDTQDPWIRNHADLSRVFLAGDSAGANIAHNVMVRFSENGAGSGLKQGRIYVEPRFATGLKIMGMALIHPFFSFDEEDKLWMYLCPGTSGLDDPRMNPAADPGLLAKMVCEKVVVCTAGKDHLRDRGWSYYEALKKSGWGGQLQIMESEDEEHCFHLFNPTCQRAQALNVAGPISGHTTSGIHLRLRHPPSSPPSDSGPPLPELDQRPRQSRRRRRSDWG 398
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g01040 398 SUPERFAMILY alpha-beta-Hydrolases 59 345 IPR029058 -
Cati3g01040 398 PANTHER ARYLACETAMIDE DEACETYLASE 57 344 IPR050466 -
Cati3g01040 398 MobiDBLite consensus disorder prediction 384 398 - -
Cati3g01040 398 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative histidine active site. 118 134 IPR002168 GO:0016787(InterPro)
Cati3g01040 398 MobiDBLite consensus disorder prediction 357 398 - -
Cati3g01040 398 Gene3D alpha-beta hydrolase 59 349 IPR029058 -
Cati3g01040 398 Pfam alpha-beta hydrolase fold 118 334 IPR013094 GO:0016787(InterPro)
Cati3g01040 398 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative serine active site. 195 207 IPR033140 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g01040 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
35672 Cati3g01040 Cati5g01286
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:14815781 Cati5g01286 Cati-Chr5:15278537 dispersed
Cati Cati-Chr3:14815781 Cati3g01041 Cati-Chr3:14865928 tandem
Cati Cati-Chr3:14815781 Cati5g01284 Cati-Chr5:15245603 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cati10g00223 . 13 427 Carbohydrate Esterase gene family AT3G09410 61.928 0.0 553.0
Cati10g00597 . 2 326 Carbohydrate Esterase gene family AT3G48700 42.025 2.38e-81 249.0
Cati10g01282 . 6 571 Carbohydrate Esterase gene family AT4G02330 58.875 0.0 671.0
Cati10g01321 . 95 606 Carbohydrate Esterase gene family AT4G33230 32.965 1.28e-89 286.0
Cati10g01372 . 34 518 Carbohydrate Esterase gene family AT4G02320 49.385 3.30e-163 471.0
Cati10g01373 . 7 577 Carbohydrate Esterase gene family AT1G02810 54.983 0.0 599.0
Cati10g01374 . 3 577 Carbohydrate Esterase gene family AT1G02810 53.596 0.0 592.0
Cati10g01394 . 62 216 Carbohydrate Esterase gene family AT3G14310 32.258 5.78e-17 76.3
Cati10g01456 . 1 343 Carbohydrate Esterase gene family AT3G63010 73.639 0.0 544.0
Cati10g03070 . 31 540 Carbohydrate Esterase gene family AT5G51500 49.414 1.33e-175 503.0
Cati10g03535 . 26 311 Carbohydrate Esterase gene family AT5G16080 35.786 6.18e-51 170.0
Cati10g03641 . 1 337 Carbohydrate Esterase gene family AT5G61570 48.986 6.39e-96 296.0
Cati11g00049 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 67.88 0.0 618.0
Cati11g00765 . 60 362 Carbohydrate Esterase gene family AT5G47500 35.238 2.89e-60 194.0
Cati11g01545 . 15 362 Carbohydrate Esterase gene family AT5G47500 74.138 0.0 537.0
Cati11g01653 . 239 566 Carbohydrate Esterase gene family AT5G49180 56.364 3.83e-131 397.0
Cati11g02481 . 23 285 Carbohydrate Esterase gene family AT1G68620 35.531 6.05e-48 162.0
Cati11g02526 ACH 448 729 Carbohydrate Esterase gene family AT5G36210 62.898 9.08e-119 355.0
Cati11g03162 . 1 118 Carbohydrate Esterase gene family AT3G16970 25.62 1.74e-06 45.4
Cati11g03479 . 14 332 Carbohydrate Esterase gene family AT2G19150 41.033 1.37e-84 257.0
Cati12g00560 . 1 543 Carbohydrate Esterase gene family AT3G05620 63.899 0.0 714.0
Cati12g00562 . 21 566 Carbohydrate Esterase gene family AT3G05610 48.195 0.0 564.0
Cati12g00740 . 2 415 Carbohydrate Esterase gene family AT3G05910 58.894 1.26e-170 479.0
Cati12g02464 . 6 284 Carbohydrate Esterase gene family AT2G41530 83.214 1.91e-178 491.0
Cati12g02463 . 6 284 Carbohydrate Esterase gene family AT2G41530 83.214 1.08e-178 492.0
Cati12g02465 . 6 232 Carbohydrate Esterase gene family AT2G41530 84.581 9.81e-145 404.0
Cati12g02546 . 1 611 Carbohydrate Esterase gene family AT2G26450 46.87 0.0 559.0
Cati12g02552 . 58 216 Carbohydrate Esterase gene family AT3G14310 27.95 5.95e-15 70.5
Cati12g03003 . 6 583 Carbohydrate Esterase gene family AT3G62170 34.66 6.69e-103 320.0
Cati1g00180 . 65 262 Carbohydrate Esterase gene family AT5G07430 40.67 2.75e-46 156.0
Cati1g00293 . 41 422 Carbohydrate Esterase gene family AT3G02410 74.026 0.0 600.0
Cati1g01255 . 5 561 Carbohydrate Esterase gene family AT3G10710 53.697 0.0 607.0
Cati1g01266 . 64 160 Carbohydrate Esterase gene family AT1G53840 34.579 2.84e-12 63.2
Cati2g00617 ACH 25 375 Carbohydrate Esterase gene family AT4G19420 44.759 1.97e-110 325.0
Cati2g00618 ACH 25 204 Carbohydrate Esterase gene family AT4G19420 53.297 6.94e-64 204.0
Cati2g00616 ACH 3 203 Carbohydrate Esterase gene family AT4G19420 50.98 1.79e-65 207.0
Cati2g00625 ACH 1 381 Carbohydrate Esterase gene family AT4G19420 41.75 1.39e-89 272.0
Cati2g00626 ACH 1 381 Carbohydrate Esterase gene family AT4G19420 41.855 9.84e-95 285.0
Cati2g00627 ACH 1 381 Carbohydrate Esterase gene family AT4G19420 43.445 2.35e-104 309.0
Cati2g00632 . 106 554 Carbohydrate Esterase gene family AT1G23200 45.197 2.37e-131 390.0
Cati2g00698 . 12 568 Carbohydrate Esterase gene family AT3G05610 44.563 2.05e-176 512.0
Cati2g00699 . 12 568 Carbohydrate Esterase gene family AT3G05610 44.563 2.05e-176 512.0
Cati2g00775 . 28 206 Carbohydrate Esterase gene family AT1G25141 27.027 6.46e-07 48.9
Cati2g00987 . 1 446 Carbohydrate Esterase gene family AT5G14310 60.714 0.0 535.0
Cati2g01928 . 26 324 Carbohydrate Esterase gene family AT1G24793 58.667 9.90e-126 360.0
Cati3g00300 . 15 380 Carbohydrate Esterase gene family AT5G55590 61.93 7.14e-153 434.0
Cati3g01040 ACH 4 323 Carbohydrate Esterase gene family AT3G48690 41.617 6.50e-74 231.0
Cati3g01041 ACH 12 335 Carbohydrate Esterase gene family AT3G48700 46.769 1.11e-95 286.0
Cati3g02199 . 58 286 Carbohydrate Esterase gene family AT1G68620 32.773 1.07e-38 138.0
Cati3g02284 . 2 511 Carbohydrate Esterase gene family AT2G45220 62.261 0.0 652.0
Cati3g02285 . 1 511 Carbohydrate Esterase gene family AT2G45220 66.73 0.0 718.0
Cati3g03179 . 81 201 Carbohydrate Esterase gene family AT4G19420 61.157 4.20e-47 159.0
Cati3g03412 ACH 3 389 Carbohydrate Esterase gene family AT4G19420 62.725 0.0 533.0
Cati3g03411 ACH 3 389 Carbohydrate Esterase gene family AT4G19420 59.796 1.74e-176 494.0
Cati3g03413 ACH 3 389 Carbohydrate Esterase gene family AT4G19420 60.411 9.94e-179 499.0
Cati3g03410 ACH 3 353 Carbohydrate Esterase gene family AT4G19420 61.905 3.87e-167 470.0
Cati3g03409 ACH 32 402 Carbohydrate Esterase gene family AT5G23870 41.779 1.19e-101 303.0
Cati3g03414 ACH 6 387 Carbohydrate Esterase gene family AT4G19420 58.747 1.17e-169 494.0
Cati3g03856 . 54 215 Carbohydrate Esterase gene family AT3G14310 30.12 5.20e-12 66.6
Cati3g04157 . 493 695 Carbohydrate Esterase gene family AT5G36210 25.806 5.27e-13 70.9
Cati3g04158 . 68 388 Carbohydrate Esterase gene family AT1G05310 69.47 1.57e-173 489.0
Cati3g04164 . 14 118 Carbohydrate Esterase gene family AT3G16970 27.103 4.82e-06 41.6
Cati4g01317 . 12 511 Carbohydrate Esterase gene family AT2G45220 41.586 5.90e-140 412.0
Cati4g02583 . 28 319 Carbohydrate Esterase gene family AT5G16080 34.967 3.26e-55 182.0
Cati4g02585 . 28 319 Carbohydrate Esterase gene family AT5G16080 35.738 1.25e-56 185.0
Cati4g02589 . 28 319 Carbohydrate Esterase gene family AT5G16080 35.41 5.38e-56 184.0
Cati5g00007 . 6 523 Carbohydrate Esterase gene family AT4G33220 60.225 0.0 655.0
Cati5g00008 . 281 545 Carbohydrate Esterase gene family AT2G26440 73.585 4.23e-143 419.0
Cati5g00013 . 138 263 Carbohydrate Esterase gene family AT3G10720 49.219 2.94e-35 126.0
Cati5g00295 . 36 303 Carbohydrate Esterase gene family AT5G47500 44.718 2.67e-83 254.0
Cati5g00531 . 57 181 Carbohydrate Esterase gene family AT1G25141 30.952 3.08e-08 52.0
Cati5g00742 . 4 303 Carbohydrate Esterase gene family AT1G19190 38.339 2.46e-63 210.0
Cati5g01284 ACH 2 314 Carbohydrate Esterase gene family AT1G19190 42.006 4.90e-83 261.0
Cati5g01286 ACH 14 314 Carbohydrate Esterase gene family AT1G19190 45.098 3.96e-89 267.0
Cati5g01364 . 81 379 Carbohydrate Esterase gene family AT5G55590 40.134 3.69e-66 210.0
Cati5g01911 . 57 325 Carbohydrate Esterase gene family AT3G14310 52.574 1.32e-83 262.0
Cati5g01910 . 57 592 Carbohydrate Esterase gene family AT3G14310 61.596 0.0 667.0
Cati5g01912 . 55 587 Carbohydrate Esterase gene family AT1G53830 58.287 0.0 622.0
Cati5g01913 . 83 592 Carbohydrate Esterase gene family AT3G14310 63.353 0.0 646.0
Cati5g01914 . 58 592 Carbohydrate Esterase gene family AT3G14310 61.567 0.0 650.0
Cati5g01917 . 52 592 Carbohydrate Esterase gene family AT3G14310 57.934 0.0 605.0
Cati5g01981 . 27 332 Carbohydrate Esterase gene family AT2G19150 43.087 1.71e-87 265.0
Cati5g02416 . 6 416 Carbohydrate Esterase gene family AT5G26670 66.344 0.0 573.0
Cati5g02576 . 2 315 Carbohydrate Esterase gene family AT1G19190 40.361 1.55e-85 259.0
Cati6g00047 . 58 357 Carbohydrate Esterase gene family AT5G47500 37.829 2.60e-74 232.0
Cati6g00343 . 187 388 Carbohydrate Esterase gene family AT1G05310 49.01 3.96e-61 197.0
Cati6g00344 . 187 388 Carbohydrate Esterase gene family AT1G05310 49.505 6.06e-63 197.0
Cati6g00458 ACH 68 729 Carbohydrate Esterase gene family AT5G36210 68.619 0.0 932.0
Cati6g01858 . 4 252 Carbohydrate Esterase gene family AT3G48700 45.02 1.68e-70 219.0
Cati6g02460 . 1 511 Carbohydrate Esterase gene family AT2G45220 64.491 0.0 694.0
Cati6g02470 . 132 231 Carbohydrate Esterase gene family AT1G53830 29.358 6.34e-06 46.2
Cati6g02472 . 37 216 Carbohydrate Esterase gene family AT5G53370 21.693 1.36e-06 48.9
Cati6g02583 . 60 321 Carbohydrate Esterase gene family AT5G16080 34.926 9.75e-47 159.0
Cati6g02585 . 40 339 Carbohydrate Esterase gene family AT5G16080 33.333 5.49e-49 165.0
Cati6g03438 . 52 583 Carbohydrate Esterase gene family AT1G53830 51.927 0.0 540.0
Cati6g03442 . 54 592 Carbohydrate Esterase gene family AT3G14310 55.638 0.0 577.0
Cati7g00516 . 72 223 Carbohydrate Esterase gene family AT5G53370 30.189 1.12e-16 75.9
Cati7g00517 . 59 219 Carbohydrate Esterase gene family AT3G14310 26.22 2.50e-15 72.0
Cati7g00518 . 38 554 Carbohydrate Esterase gene family AT1G23200 54.269 0.0 537.0
Cati7g00727 . 52 476 Carbohydrate Esterase gene family AT1G26120 55.799 9.76e-174 497.0
Cati7g01780 . 8 361 Carbohydrate Esterase gene family AT1G69940 50.838 5.00e-133 382.0
Cati7g01835 . 1 359 Carbohydrate Esterase gene family AT5G61570 51.064 1.64e-115 338.0
Cati7g01859 . 36 540 Carbohydrate Esterase gene family AT5G51500 51.677 0.0 526.0
Cati7g01860 . 51 216 Carbohydrate Esterase gene family AT1G53830 34.132 4.49e-23 94.4
Cati7g01883 ACH 51 216 Carbohydrate Esterase gene family AT1G53830 36.145 7.51e-25 103.0
Cati7g01884 ACH 59 213 Carbohydrate Esterase gene family AT3G14310 33.333 1.33e-22 93.2
Cati7g02109 . 1 587 Carbohydrate Esterase gene family AT5G53370 61.944 0.0 764.0
Cati7g02259 . 60 158 Carbohydrate Esterase gene family AT1G25141 29.412 3.83e-06 47.8
Cati7g02262 . 60 176 Carbohydrate Esterase gene family AT1G25141 30.0 1.56e-07 50.1
Cati8g00077 . 23 597 Carbohydrate Esterase gene family AT3G49220 65.476 0.0 788.0
Cati8g00154 . 1 410 Carbohydrate Esterase gene family AT5G23870 45.854 5.01e-112 329.0
Cati8g00243 . 11 506 Carbohydrate Esterase gene family AT2G45220 53.663 0.0 539.0
Cati8g00246 ACH 51 185 Carbohydrate Esterase gene family AT1G53830 35.507 6.89e-16 77.0
Cati8g00248 . 82 594 Carbohydrate Esterase gene family AT3G47400 54.28 0.0 560.0
Cati8g00254 ACH 38 216 Carbohydrate Esterase gene family AT3G14310 26.23 4.64e-16 73.9
Cati8g00255 . 19 511 Carbohydrate Esterase gene family AT2G45220 54.582 0.0 532.0
Cati8g00261 . 71 344 Carbohydrate Esterase gene family AT2G45220 44.203 2.15e-62 200.0
Cati8g00263 . 190 455 Carbohydrate Esterase gene family AT2G45220 56.929 7.10e-99 295.0
Cati8g00299 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.4 1.04e-112 331.0
Cati8g01824 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 68.319 0.0 629.0
Cati8g02958 . 1 342 Carbohydrate Esterase gene family AT3G05120 77.429 0.0 564.0
Cati8g03003 . 35 550 Carbohydrate Esterase gene family AT5G09760 57.744 0.0 607.0
Cati8g03004 . 31 546 Carbohydrate Esterase gene family AT5G09760 68.147 0.0 719.0
Cati8g03005 . 31 546 Carbohydrate Esterase gene family AT5G09760 68.147 0.0 719.0
Cati8g04794 . 38 183 Carbohydrate Esterase gene family AT1G25141 27.152 6.03e-06 47.0
Cati8g04795 . 60 169 Carbohydrate Esterase gene family AT1G25141 30.702 8.81e-06 44.7
Cati8g04796 . 60 183 Carbohydrate Esterase gene family AT1G25141 27.2 4.36e-06 45.4
Cati8g04801 . 60 196 Carbohydrate Esterase gene family AT1G25141 29.167 9.06e-06 45.8
Cati8g04844 . 38 176 Carbohydrate Esterase gene family AT1G25141 29.861 3.20e-06 46.6
Cati9g00073 . 50 591 Carbohydrate Esterase gene family AT3G14310 69.118 0.0 744.0
Cati9g01545 . 27 127 Carbohydrate Esterase gene family AT3G16970 30.275 3.07e-07 45.8
Cati9g01546 . 27 127 Carbohydrate Esterase gene family AT3G16970 30.275 2.48e-07 45.8