AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g01082 GTAAACCATGAAACTTTTGTGTCGCCGGGTGGTACTAAGTATTGGGTTCCTACTGTTTTAGAAGATGTGAAGCTAGCAGCGGATGATAAATTTTATTCAATTGAGGAAGCTGACTCCAGAATATTTATTATCATAATCAAACTTGGATGCAATGTCTTCTTCTCAACTCTCTTCGCCACGCTTGTCCTCTTCACCTACGCTTATGCACTCAAGGAAGGACAAACGTGCGTAAATAATAACAACTGTGACTCAGGGTTACATTGTGAGGCTTGCGTAGCAGATGGCAATGTTCGTCCTCGCTGTACTCGTATTCAACCTCTAAATCCTCTATCTAAGGTGAAAGGATTGCCATTCAATCGGTACTCGTGGTTAACCACGCACAATGCGTTCGCTAAATTGGGAGACAAGTCCGCTACTGGCTCTATCGTTCTCGCTCCCACGAACCAGCAGGATTCTGTTACTTCTCAGCTTAATAATGGTGTGAGAGGACTGATGCTTGATTTGTATGACTTTGAGAATGACATTTGGTTATGTCATTCCTTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCCGCTATCAATGTACTGAAAGAGGTTCGAGATTTCCTAGAAAAGAATCCTACTGAAATCGTGACAATAATCATTGAAGATTACGTTACTTCTCCAAATGGTCTAAGCAATGTATTCAACGCTGCTGGTTTGAGGAAATTCTGGTTTCCAGTAGCTCGAATGCCAAGTAATGGTCGTGATTGGCCTACAGTTGACTCCATGGTTCGACAGAATTTCCGCTTGGTGGTTTTCACCTCCAAATCTTCTAAAGAGTCGTCGGAAGGGATTGCATATGAGTGGAAGTACTTGGTGGAGAACCAATATGGAACTGATGGGATGAAAAGTGGTCTATGCCCTAATCGTGCGGAGTCTGCTGCTATGAACACTAAATCTAGATCACTGGTTTTAATGAACTACTTTCCAGATACACCGGATATCACCCAGTCTTGCAAGCACAACTCAGCCCCATTAATAAGCATGATGAACACATGTCATGACTTAGCCGGTAAACGGTGGCCTAATTTCATTGCTGTTGACTTTTACAAGAGGAGCAACGGTGGAGGTGCACCTGCTGCCGTGGATATGGCAAATGGACAGCTAGTTTGTGGCTGTAACAGCATTGCAGTATGCAGGCCAAACATGACGTTTGGTGTCTGTAACCTCCCGGAGGCGGCGGCTGCTCCAGCCCCAACTACAGCAGGGAGAAGCACGATGAACACGGGTAGTCAAGTGGTTCGGTTTGATTGGTTGTTTGGTACAGCTTAC 1320 44.62 VNHETFVSPGGTKYWVPTVLEDVKLAADDKFYSIEEADSRIFIIIIKLGCNVFFSTLFATLVLFTYAYALKEGQTCVNNNNCDSGLHCEACVADGNVRPRCTRIQPLNPLSKVKGLPFNRYSWLTTHNAFAKLGDKSATGSIVLAPTNQQDSVTSQLNNGVRGLMLDLYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEVRDFLEKNPTEIVTIIIEDYVTSPNGLSNVFNAAGLRKFWFPVARMPSNGRDWPTVDSMVRQNFRLVVFTSKSSKESSEGIAYEWKYLVENQYGTDGMKSGLCPNRAESAAMNTKSRSLVLMNYFPDTPDITQSCKHNSAPLISMMNTCHDLAGKRWPNFIAVDFYKRSNGGGAPAAVDMANGQLVCGCNSIAVCRPNMTFGVCNLPEAAAAPAPTTAGRSTMNTGSQVVRFDWLFGTAY 440
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g01082 440 PANTHER UNCHARACTERIZED 79 395 IPR051057 GO:0008081(PANTHER)
Cati3g01082 440 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 117 225 - -
Cati3g01082 440 SUPERFAMILY PLC-like phosphodiesterases 112 386 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cati3g01082 440 CDD PI-PLCc-At5g67130-like 108 382 - -
Cati3g01082 440 Gene3D Phosphatidylinositol (PI) phosphodiesterase 107 374 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g01082 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
35682 Cati3g01082 Cati5g01258
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr11:4589960 Cati3g01082 Cati-Chr3:15568456 dispersed
Cati Cati-Chr11:4634639 Cati3g01082 Cati-Chr3:15568456 dispersed
Cati Cati-Chr3:15568456 Cati8g02154 Cati-Chr8:17921655 dispersed
Cati Cati-Chr11:7601283 Cati3g01082 Cati-Chr3:15568456 transposed
Cati Cati-Chr3:15568456 Cati5g01258 Cati-Chr5:14936921 wgd