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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g01099 TTTAAAGTCAACACAATTTTGAAGGGTATAAAGGGAATTGCATACATTGTGCTCTCACAAAAACTCAACTTCAATTTTTCCATCTATACTATTTCACCTTCAACTCATCACCATTCTCCAATGACCAGTAACGGCATCCATGGCAGTCTCCTTGAAGTCACTGTTGTAAGCTGCACTAATCTCAAAGACACCGAGTGGATCTCACGCCAAGATCCTTACAACCCTGCGTTCCAAGAGAAATTCGTGTATAGCCTAGTTGAAGGACTAAGAGATTTGAACATTGCGGTTTGGAATAGCAATACCATCACACACGATGACTTGATCGGTACCGGAAGCTGGCCATTGCAGAGCAAAACTGGCAGGCATGCTGGAGAAGTTCGATTGATAATGCATTATTCCAATGCCAATAAACCGGCAAAAGATATGTATGCTCAAAAACCAGGAAAAGGATTTGCTCCATCAGCTCCTCCGTACGTAACAGACAATGCATCCCCGGCGTATATGTATGCCGCCGCACCACCACCCGCAGCATCTTATCCGCCATCTCCGTACCCATCTTGCTGTATCTAA 570 44.39 FKVNTILKGIKGIAYIVLSQKLNFNFSIYTISPSTHHHSPMTSNGIHGSLLEVTVVSCTNLKDTEWISRQDPYNPAFQEKFVYSLVEGLRDLNIAVWNSNTITHDDLIGTGSWPLQSKTGRHAGEVRLIMHYSNANKPAKDMYAQKPGKGFAPSAPPYVTDNASPAYMYAAAPPPAASYPPSPYPSCCI 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g01099 189 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 50 146 IPR035892 -
Cati3g01099 189 Gene3D C2 domain 74 150 IPR035892 -
Cati3g01099 189 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 74 180 IPR052981 -
Cati3g01099 189 Pfam C2 domain 72 117 IPR000008 -
Cati3g01099 189 CDD C2 51 117 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g01099 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
35687 Cati3g01099 Cati5g01235
35688 Cati3g01099 Cati7g02808
35689 Cati3g01099 Cati7g02822
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:16032679 Cati7g02822 Cati-Chr7:63384232 dispersed
Cati Cati-Chr3:16032679 Cati5g01234 Cati-Chr5:14475259 wgd