AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati7g00456 CGCTATTCTCTCCCCCCATTTCTTCAATCAAACCAAGCCGACGGTCCAGATTTAGTCTTATGCTCCATCTTTCTCTTTTCCTAATAACCTCCTCCTCTCTAGATCATCATCATCATCAACATCAACAACAACACTATTTCGTGATCCGATCGATCGATAGATCGATTTTACTTGCAGAATCAATCAATCAATCAGCAAAATGTCGAACGAAAAGGAAAGAGAAAATCATGTTTACCTGGCGAAGCTCGCCGAACAAGCTGAGCGTTACGAAGAGATGGTTGAAAGTATGAAGAATGTTGCAAAACTCAATGTAGAACTTACTGTTGAAGAGCGCAACCTCCTATCAGTTGGGTACAAGAACGTCATTGGTGCAAGGCGGGCATCTTGGCGTATTATGTCATCAATTGAACAGAAGGAGGAATCGAAAGGAAATGAAAGCAATGTCAACCTGATTAAGGGTTATCGCAAAAAGGTCGAGGATGAACTCGCCAAGATTTGCAGTGACATTCTTGAGATCATAGATAAGCATCTCATACCCTCTTCTGGCTCAGGAGAAGCTACTGTTTTCTATTACAAGATGAAAGGTGACTACTTCCGGTACCTTGCTGAGTTTAAGACGGACCAGGAAAGAAAGGATGCTGCTGAACAGTCATTGAAGGGCTATGAGGCATGTTTTTTCTCTCCTTATATAGATGCAGCTGCTTCTGCTGCTGCAAATACAGAACTTCCTTCAACGCACCCAATCCGTCTTGGCCTGGCACTCAATTTCTCAGTTTTCTACTATGAGATTATGAATTCTCCTGAGAGGGCCTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCTGAGTTGGACTCCTTAAGTGAGGAATCTTACAAGGACAGCACTTTGATTATGCAGCTCTTGAGAGATAACCTCACTCTTTGGACCTCTGATTTACCGGAAGATGGAGCGGGTGGGCATGTACAGGCTCAAGATTTCTTACCTAGTAAGAGACATGGTAAGGACCGACTGATACCTGAATTGACAAGGAGAGTGATGGTTTTGGTTTCAGGTGATGAAAACCACCCCAAAGGTGAAGAATCGAAATCAGCTGAACCAGAGGAGAAGCCGCCGCAGTGATGGGAGAAAGTAGGAACCCCATGGTGGATAGTAGAGGCATTCAAAAGTATTGTTGGTGGAGAAGTATGGTGTTATCTTTTTATACAAAAGGGAATCAGCCTATGTTTTTGGTTTTGTATCTTGTTTGAGTTTCTCTTTGTTCATCTTACCACCTCTCATAAGAGCTTTTCATGTTGCTTCCATAAATGGAAAATTTTATCATCCAATCCAGAGATATATCATCATTATTTTCAGACTTTATATATCTTCTGATGCCTATTCTTTTCTCTTTTTTGTTTTTAAATTCTTAAGGTTTTTCTTCCTAGTATACCCTTCTTCCTTTACTCTTTTTATTCACTTTAGGGTTGTTTACCAATCGCTTATTGGGTACATTACCGGCAAGAATTACCACCCTCGGGTACCTTATAGGGTAACATATGGATTGTTGGTAAATATCTTTTGCCGGATAACTCTTTATCTCGCTTACCGGGTAAGACCATCCGTCATTCCTATGCCTGTCAACGGTCTCGGTCTTTGCCATATTCACTCAGTACAGTAAATGAATCCCGGTAAACTTTGTAAACACCCCTTACGTTCATTGTTAGTGATTGGTGATTTGAGAAGAAATGGTTATAAGGCTCGTAGAATAATACTATACAAATGAATGAATGATATCACTG 1785 40.9 MSNEKERENHVYLAKLAEQAERYEEMVESMKNVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVNLIKGYRKKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDAAEQSLKGYEACFFSPYIDAAASAAANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGAGGHVQAQDFLPSKRHGKDRLIPELTRRVMVLVSGDENHPKGEESKSAEPEEKPPQ 308
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati7g00456 308 SUPERFAMILY 14-3-3 protein 6 247 IPR036815 -
Cati7g00456 308 ProSitePatterns 14-3-3 proteins signature 2. 227 246 IPR023409 -
Cati7g00456 308 PRINTS 14-3-3 protein zeta signature 191 217 IPR000308 -
Cati7g00456 308 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Cati7g00456 308 PRINTS 14-3-3 protein zeta signature 218 247 IPR000308 -
Cati7g00456 308 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Cati7g00456 308 Gene3D - 1 255 IPR036815 -
Cati7g00456 308 MobiDBLite consensus disorder prediction 289 308 - -
Cati7g00456 308 Coils Coil 13 33 - -
Cati7g00456 308 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Cati7g00456 308 PANTHER 14-3-3 PROTEIN 6 250 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cati7g00456 308 FunFam 14-3-3 protein epsilon 1 258 - -
Cati7g00456 308 SMART 1433-4 7 258 IPR023410 -
Cati7g00456 308 Coils Coil 205 225 - -
Cati7g00456 308 Pfam 14-3-3 protein 13 245 IPR023410 -
Cati7g00456 308 MobiDBLite consensus disorder prediction 285 308 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati7g00456 K06630 14-3-3 protein epsilon
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Event-related genes

Select Gene_1 Gene_2 Event_name
35346 Cati2g01895 Cati7g00456
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:3818692 Cati7g00456 Cati-Chr7:4263639 dispersed
Cati Cati-Chr7:4263639 Cati7g03219 Cati-Chr7:69079688 dispersed
Cati Cati-Chr2:26159406 Cati7g00456 Cati-Chr7:4263639 wgd
Cati Cati-Chr4:89509273 Cati7g00456 Cati-Chr7:4263639 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cati10g02380 ACH 4 247 14-3-3 family AT5G65430 86.066 3.68e-159 439.0
Cati11g01026 . 3 254 14-3-3 family AT3G02520 89.286 5.66e-168 463.0
Cati1g01655 . 77 158 14-3-3 family AT2G42590 73.171 2.29e-40 131.0
Cati2g01273 . 3 171 14-3-3 family AT1G34760 76.471 3.77e-91 264.0
Cati2g01895 ACH 4 256 14-3-3 family AT1G26480 71.373 5.08e-126 355.0
Cati3g00447 ACH 1 263 14-3-3 family AT2G42590 76.426 9.72e-150 417.0
Cati3g01862 . 2 256 14-3-3 family AT1G78300 87.5 4.05e-164 453.0
Cati4g03134 ACH 6 246 14-3-3 family AT1G26480 72.614 2.12e-124 351.0
Cati5g02106 . 48 102 14-3-3 family AT1G26480 80.0 2.46e-24 93.2
Cati5g02105 . 106 165 14-3-3 family AT2G42590 61.667 4.95e-23 85.9
Cati6g03275 . 4 247 14-3-3 family AT5G10450 85.656 8.86e-158 436.0
Cati6g03277 ACH 5 242 14-3-3 family AT5G10450 86.975 3.43e-155 431.0
Cati6g04459 ACH 3 259 14-3-3 family AT1G78300 88.372 1.65e-167 461.0
Cati7g00456 ACH 6 254 14-3-3 family AT1G26480 81.467 2.15e-156 436.0
Cati7g03219 ACH 1 263 14-3-3 family AT2G42590 77.186 1.70e-151 421.0
Cati8g02818 . 2 256 14-3-3 family AT1G78300 86.719 2.88e-163 451.0
Cati9g01509 . 2 249 14-3-3 family AT1G34760 74.9 1.65e-138 388.0
Cati9g01510 . 2 249 14-3-3 family AT1G34760 74.9 1.65e-138 388.0
Cati9g01531 ACH 2 259 14-3-3 family AT1G78300 84.674 3.18e-164 453.0