AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati7g00474 CCTTCGCAATTCAGTTTTTCCTAAAATCCACCTGTAAAATAAAAAAGATCAAAGAAGATAGAGATTCCCCCAATTCTATATCTATCTATCCCTCTTACTTTTAAAGGGTTTTTAGAGAGAGAGAAAGAGAGAATTAAAAGGGTTTCTGATGATCATTGGATGCACGTGGAAGAAGCAAAGGCAAAGTTTCTTTCGATTTGTCTTCATATACCATTTAATATATACATATTTATATATATTTATTTATTTGTCTCCAATTTACAATCTATCTCCTTGTATTTTATACCCATCATCAGTAATAAATAGAGTCAATACCTTCTATCTATCGTCTCTCTATGTCGTCACTGTGTGTTTTTGTGTGTAACTGTGTGTTTTTTAATATATATATTTATATAAATCATAGCTTTCTTTCATACCCATCTTCCACATTAGTCAGTTTCTTCCTTCCTCTGCCACGCATCCCCCCTTTTTTTTCTTACTTACATTAGAGGTGTGAAATTTGGGGTTTTTTAAGAAAGATGGCACTTTTGGAATCCAAAAAAGATAGGGGGGAAGTGAGGATTCATGAAAGTTTGGATGAACTTAGCACAGATTTGGCTGATTATATAGCTGAATTATCAGAGGTGTCTGTGAAAGAGCGTGGTGTCTTTGCCATTGCTTTATCTGGGGGTTCTCTCATTAGCTTAATGAGGAATCTTTGTGGAGCTCCTTATAACAAGACTGTGGATTGGTCCAAATGGTATATATTTTGGGCAGATGAACGTGTTGTTGCCAAGAATCATGTGGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTACCGATTGTTCCGAGCCATGTACATTCCATCAACGATTCTCTGACTGCAGAAGAAGCTGCGAACGAATACGAGTTTGTGATCCGCCAGCTGGTCAGGACCCGCGTGGTCAACGTCTCTGATGTCAGCGACTGCCCGAAGTTTGACCTGATCCTTCTCGGGATGGGGCCCGATGGCCACGTGGCATCTTTGTTTCCTAACCACTCGGTTCTCGAAGAAAAGAACGAGTGGGTGACGTTCATCACGACGTCCCCGAAACCCCCGCCGGAGAGAATCACGTTCACGCTGCCGGTGATCAACTGTGCCGCCAACGTGGCGGTGGTGGCGACAGGTGGCGGGAAGGCGGAGGCTGCCAGGCTGGCGATAGACGATGACGTGGGACCGGAGGGGGCCGCGGTGCCAGCTAGGATGATCCAGCCAGCTGTGGGGAAGCTGGTGTGGTTTTTGGATAATCAGGCTGGTTCAAAGCTGAAGAGCTTTTCTCAATTTTCCAAGTAGAGTTAGAGGAGAGAGGGGTAAAAAGGTCTTTTTGTGTATGTAGGTGAAGGAAAATGAAATGAATTCATACTTGTTTATGCTCCTATTTTGGATGGTTTCCTGTTTTTTGGGTTTTTGAAAGGGGCTGGTTGGTGGCAAAATTGTGATTTACCCTCTTTTTGGGTTTTTTTTTTGTTAAAGTAGAAGAGGTGTTTGACAACTTTACCCTTGAACCTACTCTTCAGTTTGTGCATATTATTTGCACTTATTGTTATTGGTATATCCCACTGTTGCCTTTTATTCATTTATGCATAATTGTTAA 1626 41.51 MALLESKKDRGEVRIHESLDELSTDLADYIAELSEVSVKERGVFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINCAANVAVVATGGGKAEAARLAIDDDVGPEGAAVPARMIQPAVGKLVWFLDNQAGSKLKSFSQFSK 268
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati7g00474 268 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 261 IPR037171 -
Cati7g00474 268 Gene3D - 9 263 - -
Cati7g00474 268 CDD 6PGL 20 252 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Cati7g00474 268 FunFam Probable 6-phosphogluconolactonase 8 261 - -
Cati7g00474 268 NCBIfam 6-phosphogluconolactonase 15 260 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Cati7g00474 268 Coils Coil 19 39 - -
Cati7g00474 268 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 262 IPR039104 -
Cati7g00474 268 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 250 IPR006148 GO:0005975(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati7g00474 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
35996 Cati4g03123 Cati7g00474
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
907574 Cati Cati7g00474 Cati-Chr7:4426914 Cati7g02179 Cati-Chr7:36996066
940216 Cati Cati4g03123 Cati-Chr4:89413337 Cati7g00474 Cati-Chr7:4426914