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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati7g00475 ATCGCCATTTTATCGTTATCAAGTGAAAAAGGAATCTGAGGGGAAGATTCATCAATCCAGAATCGAGGGATTGAGGAAAAGTAGATAATTCTTCTTCTTCTTCATCCTTCATCCTTCAATTATTCTACGCATCTCTCCACCGGAAAATGCCAACTTTAACGAAGCTATACACGATGCAAGAAGCTTCCGAGCACAATTCCGCCGGCGATTGCTGGATTGTTATCGACGGCAAGGTGTATGATGTATCATCGTATATGGAAGAACACCCAGGTGGAGATGATGTCCTCCTTCAGGCTACTGGGAAAGACGCAACGGATGAATTTGAAGACGCGGGGCATAGCAAAAGCGCTAGGGAACTTATGGAGAGTTTCTGTGTCGGAGAGCTGGACCAATCAGACATCCCTCAGCTCGAGATTGTCTCGGAGAAACAAACCAGTTACGTTTCCGAGAAGCTGCTCGACCTGAGCAAGCAATACTGGGCGGTCCCAATGGTGGCTGTCGGCATATCGGTGGTCGTCACCTTCTTGTACCTGCGCAAGAAGTAGCCAAGGAGGTTAGTTGAAATTCTGAGGGATTTTGGACCATTGAATTTTGTCATAGGATTTTTAAACCTATAAATCTGAGTAAAAGATATATGAGATCCATTAGGATACCACTCTGTTTCATTGTGGTTATTTTACAATTTTTTTTGGGAATTTATACAAGAAAAATAAACATGTGATTGAAAATTGCAACCATTTTCACCGGTTTGCAAGGTCTCAAGAAGCAATCATACAAGATGGGGTTATTGGTAATTTGGTGTAGCTAAAATATGATTAAAGGGCATCTCCAATTATTAATAGCAATTTTTTTATATTTATTATTAAAGTAATGTTATTGTTAATGCAAATAGTAATTCAACT 902 40.13 MPTLTKLYTMQEASEHNSAGDCWIVIDGKVYDVSSYMEEHPGGDDVLLQATGKDATDEFEDAGHSKSARELMESFCVGELDQSDIPQLEIVSEKQTSYVSEKLLDLSKQYWAVPMVAVGISVVVTFLYLRKK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati7g00475 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
Cati7g00475 132 Gene3D - 3 86 IPR036400 -
Cati7g00475 132 FunFam Cytochrome b5 type B 3 85 - -
Cati7g00475 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cati7g00475 132 SMART Cyt-b5-2 8 81 IPR001199 -
Cati7g00475 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cati7g00475 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cati7g00475 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cati7g00475 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cati7g00475 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cati7g00475 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Cati7g00475 132 PANTHER CYTOCHROME B5 4 128 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati7g00475 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
900756 Cati Cati4g02438 Cati-Chr4:80194855 Cati7g00475 Cati-Chr7:4433009
906110 Cati Cati6g02956 Cati-Chr6:68140655 Cati7g00475 Cati-Chr7:4433009
934887 Cati Cati7g00475 Cati-Chr7:4433009 Cati7g02167 Cati-Chr7:36671249
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cati10g00181 . 35 281 NADPH P450 reductases gene family AT5G17770 78.543 1.70e-144 404.0
Cati10g00182 . 35 281 NADPH P450 reductases gene family AT5G17770 78.543 1.70e-144 404.0
Cati10g03621 . 1 134 NADPH P450 reductases gene family AT5G53560 72.593 1.14e-69 204.0
Cati10g03622 . 1 134 NADPH P450 reductases gene family AT5G53560 72.593 1.14e-69 204.0
Cati11g01239 . 1 134 NADPH P450 reductases gene family AT5G48810 51.493 2.85e-47 147.0
Cati11g01240 . 1 134 NADPH P450 reductases gene family AT5G48810 51.493 2.85e-47 147.0
Cati11g01241 . 1 134 NADPH P450 reductases gene family AT5G48810 51.493 2.85e-47 147.0
Cati11g03476 . 1 130 NADPH P450 reductases gene family AT2G32720 44.286 2.22e-41 132.0
Cati12g00363 . 38 273 NADPH P450 reductases gene family AT5G17770 37.984 6.90e-48 170.0
Cati12g01421 . 1 120 NADPH P450 reductases gene family AT1G60660 61.667 1.95e-49 154.0
Cati12g01422 . 1 120 NADPH P450 reductases gene family AT1G60660 61.667 1.95e-49 154.0
Cati12g01598 ACH 115 211 NADPH P450 reductases gene family AT5G17770 39.175 9.19e-15 65.1
Cati12g02526 . 31 281 NADPH P450 reductases gene family AT5G17770 84.064 1.49e-163 453.0
Cati12g02707 . 5 133 NADPH P450 reductases gene family AT2G32720 75.969 9.03e-76 219.0
Cati5g00356 ACH 39 281 NADPH P450 reductases gene family AT5G17770 42.387 1.59e-61 196.0
Cati6g01834 . 3 42 NADPH P450 reductases gene family AT5G53560 37.5 5.51e-07 45.4
Cati6g01835 . 3 42 NADPH P450 reductases gene family AT5G53560 37.5 5.51e-07 45.4
Cati6g01833 . 3 42 NADPH P450 reductases gene family AT5G53560 37.5 3.97e-07 46.2
Cati6g02956 . 1 134 NADPH P450 reductases gene family AT5G53560 53.333 1.19e-47 148.0
Cati7g00475 . 1 134 NADPH P450 reductases gene family AT1G26340 64.179 3.58e-61 182.0
Cati7g02167 . 1 133 NADPH P450 reductases gene family AT5G53560 72.932 5.57e-72 210.0