Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar13g00309	ATGTCGAACGAAAAGGAAAGAGAAAATCATGTTTACTTGGCGAAGCTGGCCGAACAAGCTGAGCGTTATGAAGAGATGGTTGAAAGTATGAAGAGTGTTGCAAAACTTAATGTTGAACTTACTGTTGAAGAGCGCAACCTCCTATCAGTTGGATACAAGAATGTCATTGGTGCAAGGAGGGCATCTTGGCGTATTATGTCATCAATTGAACAAAAGGAGGAATCAAAAGGAAATGAAGGCAATGTCAACCTGATCAAGGGTTATCGTAAAAAGGTTGAGGATGAACTTTCCAAAATTTGCAGTGACATTCTCGATATCATAGATAAGCATCTGATACCCTCTTCTGGCTCAGGAGAAGCTACTGTTTTCTACTACAAGATGAAAGGTGACTACTACCGGTACCTTGCTGAGTTCAAGACCGACCAGGAAAGGAAGGATGCTGCTGAACAGTCATTGAAGGGCTATGAGGCACACCTTCCTTCAACCCACCCAATCCGTCTTGGCCTGGCACTCAATTTCTCAGTTTTCTACTATGAGATTATGAATTCTCCCGAGAGGGCCTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCTGAGTTGGACTCCTTAAGTGAGGAATCTTACAAAGACAGCACCTTGATCATGCAGCTCTTGAGAGATAACCTCACTCTTTGGACCTCTGATTTACCCGAAGATGGAGGAGAAGAAGCAGCAGCAGTGATGGGAGAAACTAGGAAAGCCCATGGTGGGCAGTAG	762	44.09	MSNEKERENHVYLAKLAEQAERYEEMVESMKSVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEGNVNLIKGYRKKVEDELSKICSDILDIIDKHLIPSSGSGEATVFYYKMKGDYYRYLAEFKTDQERKDAAEQSLKGYEAHLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEEAAAVMGETRKAHGGQ	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar13g00309	253	Gene3D	-	1	241	IPR036815	-
	Ccar13g00309	253	SUPERFAMILY	14-3-3 protein	6	230	IPR036815	-
	Ccar13g00309	253	ProSitePatterns	14-3-3 proteins signature 2.	210	229	IPR023409	-
	Ccar13g00309	253	FunFam	14-3-3 protein epsilon	1	241	-	-
	Ccar13g00309	253	Pfam	14-3-3 protein	13	228	IPR023410	-
	Ccar13g00309	253	ProSitePatterns	14-3-3 proteins signature 1.	45	55	IPR023409	-
	Ccar13g00309	253	PANTHER	14-3-3 PROTEIN	6	233	IPR000308	GO:0005737(PANTHER)\|GO:0007165(PANTHER)\|GO:0034613(PANTHER)
	Ccar13g00309	253	PIRSF	14-3-3	1	240	IPR000308	-
	Ccar13g00309	253	SMART	1433-4	7	241	IPR023410	-
	Ccar13g00309	253	PRINTS	14-3-3 protein zeta signature	39	68	IPR000308	-
	Ccar13g00309	253	PRINTS	14-3-3 protein zeta signature	88	112	IPR000308	-
	Ccar13g00309	253	PRINTS	14-3-3 protein zeta signature	174	200	IPR000308	-
	Ccar13g00309	253	PRINTS	14-3-3 protein zeta signature	201	230	IPR000308	-
	Ccar13g00309	253	Coils	Coil	188	208	-	-
	Ccar13g00309	253	Coils	Coil	13	33	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar13g00309	K06630	14-3-3 protein epsilon

Event-related genes

Select	Gene_1	Gene_2	Event_name
	37253	Ccar12g00178	Ccar13g00309
	37524	Ccar13g00309	Ccar15g00321

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr13:3709582	Ccar17g00227	Ccar-Chr17:2490424	dispersed
	Ccar	Ccar-Chr12:2218415	Ccar13g00309	Ccar-Chr13:3709582	wgd
	Ccar	Ccar-Chr13:3709582	Ccar15g00321	Ccar-Chr15:7482585	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ccar7g00643	.	2	256	14-3-3 family	AT1G78300	87.109	1.09e-163	452.0
	Ccar7g00552	.	3	254	14-3-3 family	AT3G02520	89.683	2.76e-168	465.0
	Ccar15g00658	.	6	243	14-3-3 family	AT2G42590	80.335	2.12e-142	399.0
	Ccar15g00321	ACH	155	256	14-3-3 family	AT1G26480	87.5	1.83e-62	193.0
	Ccar12g00178	ACH	6	246	14-3-3 family	AT1G26480	80.784	7.60e-153	425.0
	Ccar4g00292	.	3	259	14-3-3 family	AT1G78300	89.105	1.96e-169	466.0
	Ccar4g00105	.	160	259	14-3-3 family	AT1G78300	92.0	4.14e-62	191.0
	Ccar6g00018	ACH	1	266	14-3-3 family	AT1G35160	83.271	3.12e-163	451.0
	Ccar10g00202	.	80	164	14-3-3 family	AT4G09000	77.647	1.99e-42	139.0
	Ccar17g00227	ACH	1	263	14-3-3 family	AT2G42590	77.186	1.70e-151	421.0
	Ccar13g00309	ACH	6	248	14-3-3 family	AT1G26480	85.185	3.63e-155	430.0
	Ccar3g00822	ACH	4	242	14-3-3 family	AT5G65430	87.029	6.79e-157	435.0
	Ccar3g00808	.	118	163	14-3-3 family	AT5G65430	54.348	4.18e-10	56.6
	Ccar1g01631	.	2	256	14-3-3 family	AT1G78300	86.381	1.54e-160	446.0
	Ccar2g02065	ACH	1	263	14-3-3 family	AT2G42590	76.806	2.82e-150	418.0