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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar13g00319 ATGGCTCTTTTGGAATCAAAAAAAGACAGAGGGGAGGTGAGGATTCATGAAAGTTTGGATGAACTTAGTACAGATTTGGCTGATTATATAGCAGAATTATCAGAGGCATCAGTTAAAGAGCGTGGTGTTTTTGCCATTGCTTTATCTGGAGGTTCTCTCATTAGCTTGATGAGGAATCTTTGTGGAGCTCCTTATAACAAGACTGTAGATTGGTCCAAATGGTATATATTCTGGGCAGATGAACGTGTTGTGGCCAAGAATCATGTAGACAGCAACTATAAGTTTGCCAAAGATCATCTTTTATCTAAGAAACAAGAGGAAGCAGAGCATAGTTTACCAACTTTATATAACAAATCCTGTTTCATTTGCATTACGAATAAGCATCTCGATAGAATAAACGATTTCCAGAGACCAATTTTGAAGGTTCAAAGGATGATCTTTATGGTAGAGAATGGTGTCAGTGATTCTCAGAGGTTCAACAAGAAACTTGTATATATGATCAGGTTACCAATTGTTCCGAGCCATGTACATTCCATCAACGATTCTCTGACTGCAGAAGAAGCTGCGAACGAATACGAGTTTGTGATCAGACAGCTGGTCAGAACCCGAGTGGTCAACGTGTCTGATGTCAGCGACTGCCCGAAGTTTGATCTAATCCTTCTAGGGATGGGCCCGGATGGCCACGTGGCATCCCTGTTCCCTAACCACGCGGTTCTTGAAGAAAAGAACGAGTGGGTGACATTCATCACCACATCCCCTAAGCCTCCGCCAGAAAGAATCACGTTCACGCTACCGGTTATCAACTGTGCAGCCAATGTGGTGGTTGTGGTGACAGGTGTTGGAAAAGCGGAAGCTGCCCGGCTGGCGATAGACGATGATGTGGGACCGGAGGGTCATGTGTTGCCAGCTAGGATGATCCAACCAGCTGTAGGGAAACTGGTGTGGTTTTTGGATAATCAGGCTGGTTCAAAGTTGAAGAGGTTTTCTAAGTAG 993 44.11 MALLESKKDRGEVRIHESLDELSTDLADYIAELSEASVKERGVFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKFAKDHLLSKKQEEAEHSLPTLYNKSCFICITNKHLDRINDFQRPILKVQRMIFMVENGVSDSQRFNKKLVYMIRLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLFPNHAVLEEKNEWVTFITTSPKPPPERITFTLPVINCAANVVVVVTGVGKAEAARLAIDDDVGPEGHVLPARMIQPAVGKLVWFLDNQAGSKLKRFSK 330
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar13g00319 330 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 111 IPR037171 -
Ccar13g00319 330 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 168 315 IPR006148 GO:0005975(InterPro)
Ccar13g00319 330 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 112 IPR006148 GO:0005975(InterPro)
Ccar13g00319 330 SUPERFAMILY NagB-RpiA-CoA transferase-like 169 327 IPR037171 -
Ccar13g00319 330 CDD 6PGL 20 317 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Ccar13g00319 330 Gene3D - 148 328 - -
Ccar13g00319 330 Gene3D - 9 136 - -
Ccar13g00319 330 NCBIfam 6-phosphogluconolactonase 155 325 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Ccar13g00319 330 Coils Coil 19 39 - -
Ccar13g00319 330 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 327 IPR039104 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar13g00319 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
37259 Ccar12g00185 Ccar13g00319
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
957766 Ccar Ccar13g01148 Ccar-Chr13:17466072 Ccar13g00319 Ccar-Chr13:3856954
958865 Ccar Ccar17g01079 Ccar-Chr17:35472359 Ccar13g00319 Ccar-Chr13:3856954
963659 Ccar Ccar12g00185 Ccar-Chr12:2298133 Ccar13g00319 Ccar-Chr13:3856954