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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01770 ATGGATTTCTACAAGCAAACCTTGGTGGAACAAGATGCAGAGATGAAGCAAAATTTGGCATCTGACAACAACAACAGCAAGAAGAAGAGGAAGAGGAAGAGGACTCCTAAAGAGCCTTGGGAACCTAAATCCAAGGATAAACAGATTATGTCGGATAAGCCCAAGAAATGTCCAGGCAAGGGAAAAAGAACGCGGGTTTGTGACATTTATAATGATGCCGAAGATCAATATATGTGTTTGGAGCGAGCAGCATTCTTATTGGAACGTCTAGATGCAGAGTCACCTAAGTTTGCCAAATGTATGCTCCCATCAAATGTTCTCTACAGTTTTTGGTTGATTCTACCGAAGAAATTCTGTGTTATGCATTTGCCTGAGCACGATACGACTGTTACGCTTGTGGACGAGACTGGAAAGGAGTTTAAGACGAATTATCTCAAGGTAAGGCACGGTTTAAGTGCTGGCTGGAGGGGATTTTCCATTGCACAAAAGTTGCTTCAGGGTGATATTCTGTTCTTCCATCTCGTTGAACCCTGCAAATTACAGGTTAATATAGTACGAAGATATGGGTTAGAAACGATAGAAGCGGCTGTTTGCCTAATGGAAATGCATCCTCGTGTTAAAAAGACAAGGACGTCAAATTACTTTGATAAAGCGGGCGAACCAAAGAAAGAAAAACTTAAACATAAAGAAGCCAAGAAAGAAGACGAAGGTAAACTAAAGAACCAAACTCCCCCGATGCTTATACAAACAAAGAAAGGTAAGAGAACGCGTAGAAGCCCAAAGAAGTTCATAGCTAGACTGTCTCTAGATTTTTGTGAACGTAACGTGGAAGAAGACGGTGAAAGGGTATCGTGTGTGGACCAATGTGAAAATAGCAGCGACGGCTTGAGCTCGGAAGTTGTCCAAGGGTCGACGTTGGAAATGACGAATCAATCGCAACCTGATGAGGTCGGGTGCTATGCACTGAATCTGGCGTGCCATGAAGGCATCAACTGTCATTCGACTGCTGAAAGAATATATCATTCTTCTACAGTTACCACATAA 1044 42.43 MDFYKQTLVEQDAEMKQNLASDNNNSKKKRKRKRTPKEPWEPKSKDKQIMSDKPKKCPGKGKRTRVCDIYNDAEDQYMCLERAAFLLERLDAESPKFAKCMLPSNVLYSFWLILPKKFCVMHLPEHDTTVTLVDETGKEFKTNYLKVRHGLSAGWRGFSIAQKLLQGDILFFHLVEPCKLQVNIVRRYGLETIEAAVCLMEMHPRVKKTRTSNYFDKAGEPKKEKLKHKEAKKEDEGKLKNQTPPMLIQTKKGKRTRRSPKKFIARLSLDFCERNVEEDGERVSCVDQCENSSDGLSSEVVQGSTLEMTNQSQPDEVGCYALNLACHEGINCHSTAERIYHSSTVTT 347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01770 347 Gene3D - 79 188 IPR015300 -
Ccar2g01770 347 SMART B3-2 97 188 IPR003340 GO:0003677(InterPro)
Ccar2g01770 347 SUPERFAMILY DNA-binding pseudobarrel domain 91 187 IPR015300 -
Ccar2g01770 347 Pfam B3 DNA binding domain 97 187 IPR003340 GO:0003677(InterPro)
Ccar2g01770 347 MobiDBLite consensus disorder prediction 217 239 - -
Ccar2g01770 347 MobiDBLite consensus disorder prediction 37 62 - -
Ccar2g01770 347 CDD B3-DNA 95 186 IPR003340 GO:0003677(InterPro)
Ccar2g01770 347 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 25 187 IPR044837 -
Ccar2g01770 347 MobiDBLite consensus disorder prediction 14 62 - -
Ccar2g01770 347 ProSiteProfiles B3 DNA-binding domain profile. 97 188 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01770 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:63613825 Ccar2g01771 Ccar-Chr2:63631399 tandem
Ccar Ccar-Chr2:63613825 Ccar5g01328 Ccar-Chr5:33628796 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00612 . 155 556 B3 DNA Binding Superfamily AT2G46530 31.144 5.60e-61 202.0
Ccar14g00609 . 6 543 B3 DNA Binding Superfamily AT2G46530 31.636 2.34e-76 248.0
Ccar14g00611 . 12 351 B3 DNA Binding Superfamily AT2G46530 41.159 2.89e-85 268.0
Ccar14g00211 . 114 183 B3 DNA Binding Superfamily AT1G19220 82.857 7.52e-37 127.0
Ccar14g00210 . 581 928 B3 DNA Binding Superfamily AT1G30330 58.516 1.76e-107 347.0
Ccar14g00112 . 1 508 B3 DNA Binding Superfamily AT2G33860 46.263 6.38e-138 414.0
Ccar14g00045 . 15 655 B3 DNA Binding Superfamily AT4G21550 37.892 6.08e-131 403.0
Ccar11g01181 . 1 483 B3 DNA Binding Superfamily AT1G19220 62.55 0.0 575.0
Ccar11g01072 ACH 1 556 B3 DNA Binding Superfamily AT2G46530 53.253 0.0 553.0
Ccar11g00571 . 2 659 B3 DNA Binding Superfamily AT2G28350 45.468 4.17e-155 460.0
Ccar11g00271 ACH 62 764 B3 DNA Binding Superfamily AT5G60450 46.883 2.32e-177 538.0
Ccar16g00202 ACH 14 532 B3 DNA Binding Superfamily AT2G46530 49.107 1.34e-154 452.0
Ccar7g00347 . 115 230 B3 DNA Binding Superfamily AT3G19184 43.966 4.80e-29 112.0
Ccar8g00786 . 1 204 B3 DNA Binding Superfamily AT3G19184 60.096 7.73e-75 226.0
Ccar8g00029 . 20 479 B3 DNA Binding Superfamily AT1G19220 68.033 0.0 627.0
Ccar9g00912 . 4 233 B3 DNA Binding Superfamily AT5G58280 45.652 1.26e-63 200.0
Ccar9g00927 ACH 1 672 B3 DNA Binding Superfamily AT4G32010 44.922 0.0 628.0
Ccar9g00812 . 12 631 B3 DNA Binding Superfamily AT3G24650 39.803 1.42e-92 301.0
Ccar9g00623 . 721 784 B3 DNA Binding Superfamily AT5G62000 43.75 5.54e-09 57.8
Ccar9g00145 ACH 5 754 B3 DNA Binding Superfamily AT4G32010 46.951 0.0 706.0
Ccar15g01204 . 1 615 B3 DNA Binding Superfamily AT4G23980 58.06 0.0 691.0
Ccar15g00391 . 6 259 B3 DNA Binding Superfamily AT4G00260 23.875 1.26e-10 61.2
Ccar12g00958 . 1 278 B3 DNA Binding Superfamily AT2G33860 43.972 5.09e-60 206.0
Ccar4g00732 ACH 1 193 B3 DNA Binding Superfamily AT5G62000 63.768 1.57e-75 249.0
Ccar4g00500 . 50 215 B3 DNA Binding Superfamily AT3G19184 54.971 5.15e-54 171.0
Ccar6g00712 ACH 1 850 B3 DNA Binding Superfamily AT5G62000 55.944 0.0 884.0
Ccar6g00634 . 311 367 B3 DNA Binding Superfamily AT4G32010 52.632 1.17e-16 73.6
Ccar10g00391 . 25 124 B3 DNA Binding Superfamily AT3G18960 33.0 3.04e-11 61.2
Ccar17g01250 . 1 473 B3 DNA Binding Superfamily AT1G19220 76.956 0.0 742.0
Ccar5g01588 . 45 313 B3 DNA Binding Superfamily AT3G26790 39.465 4.58e-52 173.0
Ccar5g01371 . 4 108 B3 DNA Binding Superfamily AT5G66980 40.566 8.80e-21 85.1
Ccar5g01328 . 112 221 B3 DNA Binding Superfamily AT3G19184 48.182 5.44e-30 117.0
Ccar5g01151 . 271 306 B3 DNA Binding Superfamily AT4G30080 63.889 7.85e-07 44.7
Ccar5g00988 . 1 801 B3 DNA Binding Superfamily AT5G37020 62.824 0.0 977.0
Ccar5g00764 . 5 518 B3 DNA Binding Superfamily AT4G32010 52.26 1.84e-177 526.0
Ccar5g00287 ACH 9 745 B3 DNA Binding Superfamily AT2G30470 39.358 7.68e-166 498.0
Ccar13g01079 . 16 796 B3 DNA Binding Superfamily AT5G37020 56.625 0.0 832.0
Ccar13g00783 ACH 1 660 B3 DNA Binding Superfamily AT4G30080 54.481 0.0 661.0
Ccar3g01406 . 25 124 B3 DNA Binding Superfamily AT3G18960 34.0 2.80e-12 64.3
Ccar3g00992 . 119 184 B3 DNA Binding Superfamily AT1G19220 86.364 4.05e-37 130.0
Ccar3g00761 . 1 537 B3 DNA Binding Superfamily AT4G30080 55.674 0.0 573.0
Ccar3g00301 . 674 892 B3 DNA Binding Superfamily AT1G19850 60.274 7.07e-69 236.0
Ccar3g00302 ACH 29 135 B3 DNA Binding Superfamily AT1G19850 73.636 9.86e-50 167.0
Ccar1g02415 . 33 187 B3 DNA Binding Superfamily AT1G19850 75.472 1.04e-76 244.0
Ccar1g02413 . 294 895 B3 DNA Binding Superfamily AT1G19850 43.387 4.45e-132 405.0
Ccar1g02414 . 247 301 B3 DNA Binding Superfamily AT1G19850 89.091 1.54e-24 92.4
Ccar1g02137 . 15 272 B3 DNA Binding Superfamily AT2G46530 57.364 1.83e-86 267.0
Ccar1g00882 . 2 693 B3 DNA Binding Superfamily AT2G28350 54.839 0.0 709.0
Ccar1g00862 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 49.144 0.0 627.0
Ccar1g00510 ACH 1 668 B3 DNA Binding Superfamily AT4G30080 58.032 0.0 713.0
Ccar2g01771 . 108 256 B3 DNA Binding Superfamily AT3G19184 50.667 4.06e-45 155.0
Ccar2g01770 . 52 199 B3 DNA Binding Superfamily AT5G42700 37.838 1.41e-27 105.0
Ccar2g01466 . 281 663 B3 DNA Binding Superfamily AT1G59750 54.774 3.54e-121 370.0
Ccar2g00682 . 1 486 B3 DNA Binding Superfamily AT1G19220 56.68 1.04e-167 516.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar B3 9.1e-15 CL0405 TF B3