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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01786 ATGGGGAGCTTAAATCCGTCTCCTGAACTCACCTTGGATCTCAAACCAAGTTTTATCCCCAAAACTATCAGTCAGTTTCTTGGAGGAATGTCGAGAATCGGTAGCGTAACCGAGAAGGTATTGCAGGTTGATGATTTCGTTGACCGATTAGAAACCGAAACGCGGAAAATCGAAGCATTTGAACGGGAACTTCCTCTGTGCATGCTCCTCATCAATGATGCAATTGTTGCATTGAAAGAAGTTTCAATGGTGTTAAAGAAATCATCAAATGCTGAGCCTGTACTTGAAGAATTTATACCACTCAAGAACAGTTGTGATGATGATGCAAAAGTTGAAAGTATCATAAAAAAGGACAGTGGTGATAAAAAGAATTGGTTGAGCTCCACACAGCTTTGGAACACCAATGAGAACATCATCCAGATACCAAATGCAACAATTAAAAAGAGAGCTGAGGAAGAAGATTGTGGGAAAGCATTTTTCTTCCCTGAAATCAAGAATCCAATGAGGGAAAATGGTTTGCTTACTGAAATCAACGGTGACTGTAGATTGACACAAAATGTCCAATCAAACATACAGACTAGCGGCACCGCCGGTCTGCCACCACACCAGCAGACATCCAGGAAACAAAGAAGATGCTGGTCCACGGAGTTGCATAGACGATTTGTCAATGCCTTGCAACAACTTGGTGGCTCACATGAATCAAGATTCATACAAACCCTTTTGCCAGCAGCCACCCCTAAGCAGATTCGAGAACTTATGCAAGTAGATGGTCTCACCAACGATGAAGTGAAGAGCCATTTGCAGAAATACAGGCTTCATACACGAAGGTTTCCATCTTCAAACACAAATCAATCAGGTGTTGTTTTGGGTGGCGGTTTATGGATGCCGCCACAAGATCAGTATGTTGGATCCTCCAAATGTAGCAATTCTCAATCCGGTTCTCCTGATGGCCCCCTCCCAAATGGCGGCAACACCATGGACGACGAAGAAGACGAGAAATCTGAGAATTATTGCTGGACTGGTAATCTTTAA 1032 43.02 MGSLNPSPELTLDLKPSFIPKTISQFLGGMSRIGSVTEKVLQVDDFVDRLETETRKIEAFERELPLCMLLINDAIVALKEVSMVLKKSSNAEPVLEEFIPLKNSCDDDAKVESIIKKDSGDKKNWLSSTQLWNTNENIIQIPNATIKKRAEEEDCGKAFFFPEIKNPMRENGLLTEINGDCRLTQNVQSNIQTSGTAGLPPHQQTSRKQRRCWSTELHRRFVNALQQLGGSHESRFIQTLLPAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRFPSSNTNQSGVVLGGGLWMPPQDQYVGSSKCSNSQSGSPDGPLPNGGNTMDDEEDEKSENYCWTGNL 343
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01786 343 Gene3D - 207 275 - -
Ccar2g01786 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 273 IPR006447 GO:0003677(InterPro)
Ccar2g01786 343 SUPERFAMILY Homeodomain-like 205 276 IPR009057 -
Ccar2g01786 343 Coils Coil 43 63 - -
Ccar2g01786 343 MobiDBLite consensus disorder prediction 299 343 - -
Ccar2g01786 343 MobiDBLite consensus disorder prediction 301 319 - -
Ccar2g01786 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 337 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Ccar2g01786 343 Pfam Myb-like DNA-binding domain 210 271 IPR001005 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01786 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
38049 Ccar17g00438 Ccar2g01786
38832 Ccar2g01786 Ccar8g00804
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr12:3812092 Ccar2g01786 Ccar-Chr2:63876515 dispersed
Ccar Ccar-Chr2:63876515 Ccar5g00607 Ccar-Chr5:8764821 dispersed
Ccar Ccar-Chr17:5156121 Ccar2g01786 Ccar-Chr2:63876515 wgd
Ccar Ccar-Chr2:63876515 Ccar8g00804 Ccar-Chr8:21582404 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar11g00870 ACH 192 348 G2-like Transcription Factor family AT1G32240 66.265 5.89e-61 197.0
Ccar11g00093 ACH 1 276 G2-like Transcription Factor family AT3G24120 57.746 7.93e-95 286.0
Ccar7g00731 . 1 403 G2-like Transcription Factor family AT5G16560 33.257 2.58e-37 137.0
Ccar8g00804 ACH 6 314 G2-like Transcription Factor family AT2G03500 39.244 9.32e-57 190.0
Ccar8g00368 . 195 266 G2-like Transcription Factor family AT1G32240 47.945 4.25e-09 53.1
Ccar9g00782 ACH 1 376 G2-like Transcription Factor family AT4G28610 46.193 3.46e-98 298.0
Ccar9g00613 . 1 63 G2-like Transcription Factor family AT3G24120 70.312 1.24e-23 90.1
Ccar9g00417 ACH 1 312 G2-like Transcription Factor family AT3G46640 52.212 5.17e-88 265.0
Ccar9g00187 . 15 187 G2-like Transcription Factor family AT2G01060 41.04 2.11e-36 127.0
Ccar15g01348 . 1 245 G2-like Transcription Factor family AT5G45580 53.968 2.06e-77 234.0
Ccar15g01328 ACH 176 334 G2-like Transcription Factor family AT1G32240 66.864 5.82e-65 205.0
Ccar12g01192 . 5 257 G2-like Transcription Factor family AT2G01060 68.359 4.27e-105 309.0
Ccar12g01191 . 25 205 G2-like Transcription Factor family AT3G24120 55.249 9.54e-62 192.0
Ccar12g01175 . 8 417 G2-like Transcription Factor family AT2G20570 45.047 1.07e-83 258.0
Ccar12g01140 . 66 133 G2-like Transcription Factor family AT2G40260 60.294 3.65e-24 93.2
Ccar12g01028 . 58 143 G2-like Transcription Factor family AT2G42660 46.591 9.05e-13 65.1
Ccar12g00386 . 21 53 G2-like Transcription Factor family AT2G02060 78.788 4.98e-13 64.7
Ccar12g00307 ACH 2 324 G2-like Transcription Factor family AT1G25550 50.546 2.01e-105 312.0
Ccar4g00029 . 159 276 G2-like Transcription Factor family AT3G24120 51.2 1.49e-27 102.0
Ccar6g00025 . 32 84 G2-like Transcription Factor family AT5G45580 62.264 9.04e-16 70.5
Ccar10g00794 . 1 276 G2-like Transcription Factor family AT3G24120 65.141 6.48e-125 356.0
Ccar17g01111 . 1 432 G2-like Transcription Factor family AT2G03500 42.91 1.64e-111 336.0
Ccar17g00438 ACH 6 317 G2-like Transcription Factor family AT2G03500 37.069 2.87e-51 176.0
Ccar17g00067 . 14 181 G2-like Transcription Factor family AT3G12730 60.714 7.82e-57 184.0
Ccar5g00961 . 1 279 G2-like Transcription Factor family AT5G16560 40.994 3.37e-46 164.0
Ccar5g00744 . 6 178 G2-like Transcription Factor family AT2G01060 36.782 7.78e-26 100.0
Ccar5g00607 ACH 1 335 G2-like Transcription Factor family AT3G10760 60.947 5.64e-98 289.0
Ccar5g00505 . 175 345 G2-like Transcription Factor family AT5G06800 44.022 9.27e-35 129.0
Ccar5g00506 . 275 322 G2-like Transcription Factor family AT5G06800 72.917 3.13e-16 69.7
Ccar5g00404 . 1 229 G2-like Transcription Factor family AT3G46640 52.713 3.17e-76 235.0
Ccar5g00335 . 65 410 G2-like Transcription Factor family AT2G40260 32.778 3.60e-35 131.0
Ccar5g00164 ACH 1 367 G2-like Transcription Factor family AT4G28610 36.364 7.89e-56 187.0
Ccar13g01388 . 245 269 G2-like Transcription Factor family AT5G16560 96.0 1.81e-08 51.6
Ccar13g00449 ACH 2 326 G2-like Transcription Factor family AT1G25550 43.333 2.64e-79 245.0
Ccar3g01014 . 2 263 G2-like Transcription Factor family AT5G42630 41.457 1.10e-52 174.0
Ccar3g00602 . 44 186 G2-like Transcription Factor family AT2G40260 59.31 1.63e-45 159.0
Ccar3g00249 . 78 138 G2-like Transcription Factor family AT5G29000 39.344 3.15e-07 48.1
Ccar1g02539 . 56 133 G2-like Transcription Factor family AT2G40260 49.02 1.18e-20 86.3
Ccar1g01832 . 18 387 G2-like Transcription Factor family AT3G04030 47.7 9.77e-99 296.0
Ccar1g00296 . 72 200 G2-like Transcription Factor family AT2G40260 58.915 7.55e-43 152.0
Ccar2g01786 ACH 4 317 G2-like Transcription Factor family AT2G03500 36.873 4.98e-51 173.0
Ccar2g01681 . 239 271 G2-like Transcription Factor family AT1G32240 81.818 1.13e-10 56.6
Ccar2g01137 . 51 410 G2-like Transcription Factor family AT2G40260 34.805 2.02e-38 140.0
Ccar2g00613 ACH 1 312 G2-like Transcription Factor family AT3G46640 48.64 5.67e-77 236.0
Ccar2g00424 ACH 1 335 G2-like Transcription Factor family AT3G10760 54.572 4.89e-85 256.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar Myb_DNA-binding 2.1e-05 CL0123 TF GARP-G2-like