AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01796 ATGATGAAGGGGGTAAAGAATTACCTGAGGATGCCCACTGATCCAACTATATCAGAAGCAACATCCAAGTTGATCAATTCAGATTTGAAAGAAATCGGAGATGCCACCAAGAAACTGGCTGATCATGTCATCAAGCTCGGAGTCAGCGGTGGTTTGATTACTACCATCCTTCAATGGTTCGCGTGCTTTTCCGCCATTTATTTGCTGGTACTGGATCGAACAAACTGGAGGACGAATATGCTCACTTCACTCTTGGTCCCTTACATCTTTTTAACCTTTCCTAATTGGCTCTTCGGAATTTTGAGAGGAGACATCGGGAAATGGATCACCGTCGTCGGAGTTATATTGCGTCTCTTCTTCCCTAATCATTTTCCAGATTATTTGGAGTTGCCGGGATCTCTGGTCCTTTTGGTAGTGGTAGCTCCGAGCTTCTTAGCTGGGTATGTAAGAGCAGGGTGGATAGGCGTGATTATCTGTCTAGCAATCGGGTGCTATCTTCTCCAAGAACACATCAGAGCTTCCGGAGGTTTCAGGAATGCATTCACCAAGAGCAACGGCATTTCCAACACAATCGGTATCGTTCTCTTGTTCGTCTTCCCCGTCTGGGCATTGATCGGCTTAATATAA 627 45.45 MMKGVKNYLRMPTDPTISEATSKLINSDLKEIGDATKKLADHVIKLGVSGGLITTILQWFACFSAIYLLVLDRTNWRTNMLTSLLVPYIFLTFPNWLFGILRGDIGKWITVVGVILRLFFPNHFPDYLELPGSLVLLVVVAPSFLAGYVRAGWIGVIICLAIGCYLLQEHIRASGGFRNAFTKSNGISNTIGIVLLFVFPVWALIGLI 208
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01796 208 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 11 204 IPR008892 GO:0016020(InterPro)
Ccar2g01796 208 Pfam Cold acclimation protein WCOR413 19 196 IPR008892 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01796 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:64041701 Ccar7g00312 Ccar-Chr7:3379043 wgd