AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01798 ATGGATGACGTACCAGGATCCATGGGTACCAGTGCAGGATTCGCTCTCAGGCTCGGTCAGACCATCTTCTCCTCTGCTGCTCTTCTCTTCATGGCGCTTGGTGGTCAATTCTACAGCTATACCTCCTTCTGCTTCTTGGTGACAATAATGGGTTTGGTTATTCCATGGAGTTTCACATTGGCATTTCTTGATGGATACTCTGTTCTTGTTACACACCCAGTTCGACAAAAAGGAATCTTGTTCATCATCGTTATAGGGGATTGGGTGTTATTGACTCTCACACTAGCTGCAGCCTCTTCAGCTGCGGCCGTGGTGGATATCTTGCTGAGGGCAGAAGGATCCGTCTGCCCTCCAAAAATCTGCAGCCGCTATCTACTTTCCACCATATTTGCTTTCTTGTCGTGGTTCTTGTCTATGGCTTCTTCTCTATTCAATCTATGGCTTCTTCCATCTTTGTGA 459 46.84 MDDVPGSMGTSAGFALRLGQTIFSSAALLFMALGGQFYSYTSFCFLVTIMGLVIPWSFTLAFLDGYSVLVTHPVRQKGILFIIVIGDWVLLTLTLAAASSAAAVVDILLRAEGSVCPPKICSRYLLSTIFAFLSWFLSMASSLFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01798 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
Ccar2g01798 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01798 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:64082603 Ccar5g01378 Ccar-Chr5:34379757 wgd
Ccar Ccar-Chr2:64082603 Ccar7g00310 Ccar-Chr7:3365031 wgd