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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01828 ATGCATCTTCTTCTTCTTCCCCCGACACTCTGCTCTCTCTCCCCCCTTCCTCCCCACCGCCACCTTCACTTCCGGACGCGCCACCGCCAAAACCTCCGTTACCTCAAAACCCTCGGTATTACCCCACCGGATTTCCACTCCCCTCAAACCCTGTCTCAAATCCTATCAACCCTAAATTACTTCAAATCCAAAGGCTTTTCGGAGCCCGATTTCCCTAGAATCGCCTTTCTCTCCCCACATCTCTTCACCCCGACCTTCGATCCCATCGCCATCGAACCCGTTTTCGATTTCTTAACCGTCGATTTAGCCGCGTCGCCGGAGGAGATCCGTGGATTGATCCTCAAATGCCCTCACATCCTCGAATCGGATCCGGATTTGTGCTTGAAACCGACACTCAGTTACCTCAAAAAGTTGGGGATTAAGCAGTTGAAGTCTCCAACAACCTTGAATGCTCATCTACTGGATACAAGAGTAGAGAAATTAGAAGAGAAAATGAGGTTTTTGCGAAGCGTAGGGTTTTCCGTTGAGGAATCGAGGAGGATATGCGGGCGGTTTCCGGCGATATTTGGGTACGGTATAGAGCATAACTTGAGGCCCAAGTTTGAGTATTTGAGGAAGGAGATGAAGAGGAATGGTAGGGAGGAAGTGAACAAGTTTCCACAGTATTTCGGGTTCAGTTTGGAGAAGCGGATAAAGCCCAGATATCTGCATCTGAAACAGAGGAATGTTGATGGAAGTGATTGA 744 48.92 MHLLLLPPTLCSLSPLPPHRHLHFRTRHRQNLRYLKTLGITPPDFHSPQTLSQILSTLNYFKSKGFSEPDFPRIAFLSPHLFTPTFDPIAIEPVFDFLTVDLAASPEEIRGLILKCPHILESDPDLCLKPTLSYLKKLGIKQLKSPTTLNAHLLDTRVEKLEEKMRFLRSVGFSVEESRRICGRFPAIFGYGIEHNLRPKFEYLRKEMKRNGREEVNKFPQYFGFSLEKRIKPRYLHLKQRNVDGSD 247
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01828 247 SMART mt-12 144 174 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Ccar2g01828 247 SMART mt-12 213 244 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Ccar2g01828 247 SMART mt-12 179 211 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Ccar2g01828 247 SMART mt-12 110 141 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Ccar2g01828 247 Gene3D Transcription termination factor 3, mitochondrial 45 246 IPR038538 -
Ccar2g01828 247 PANTHER CGI-12 PROTEIN-RELATED 48 239 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Ccar2g01828 247 Pfam mTERF 101 243 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01828 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar mTERF 2.1e-29 No_clan TR mTERF