Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g01844	ATGGCGAAACAATGGGTCTCCTTTTTCGCATTAGCTTTCATCGTTTTTGTTCTTGCTATCTCAGAAACACAAACGGTGAAAGGGGAACTATGCGAGAAAGCTAGCAAGACATGGTCAGGCAACTGTGGCAACACGAAACATTGTGACGACCAATGCAAGTCTTGGGAGGGTGCAGCCCATGGAGCGTGTCATGTGCGCAACGGCAAACACATGTGCTTTTGCTACTTCAATTCATGTGCAGAGGCCGATAAACTTTCCGAAGATCAAATTGAAGCTGGGAAGCTCGCCTTCGAAAAAGCTGAAAAGCTCGACAGAGATGTCAAGAAAGCGGTACCAAACGTCGATCACCCATGA	354	47.18	MAKQWVSFFALAFIVFVLAISETQTVKGELCEKASKTWSGNCGNTKHCDDQCKSWEGAAHGACHVRNGKHMCFCYFNSCAEADKLSEDQIEAGKLAFEKAEKLDRDVKKAVPNVDHP	117

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g01844	117	SMART	gth-4	30	78	IPR003614	GO:0006952(InterPro)
	Ccar2g01844	117	Pfam	Gamma-thionin family	30	77	-	-
	Ccar2g01844	117	CDD	Knot1	40	75	IPR003614	GO:0006952(InterPro)
	Ccar2g01844	117	Gene3D	-	30	79	IPR036574	-
	Ccar2g01844	117	SUPERFAMILY	Scorpion toxin-like	29	77	IPR036574	-
	Ccar2g01844	117	PANTHER	DEFENSIN-LIKE PROTEIN 1	1	77	-	GO:0006952(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g01844	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr17:4600164	Ccar2g01844	Ccar-Chr2:64732580	dispersed
	Ccar	Ccar-Chr2:64732580	Ccar2g01851	Ccar-Chr2:64849087	dispersed
	Ccar	Ccar-Chr2:64732580	Ccar2g01846	Ccar-Chr2:64770242	proximal

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ccar7g00404	.	29	78	Plant Defensins gene family	AT1G19610	54.0	1.64e-13	61.6
	Ccar12g00415	.	10	72	Plant Defensins gene family	AT1G61070	39.189	6.49e-10	49.3
	Ccar17g00399	.	11	78	Plant Defensins gene family	AT1G19610	50.0	1.34e-21	79.3
	Ccar3g00201	.	12	77	Plant Defensins gene family	AT2G02130	35.714	1.34e-11	52.8
	Ccar2g01846	.	26	78	Plant Defensins gene family	AT1G19610	54.717	3.49e-14	65.9
	Ccar2g01847	.	26	78	Plant Defensins gene family	AT1G19610	56.604	1.38e-17	70.1
	Ccar2g01844	.	1	77	Plant Defensins gene family	AT1G19610	49.351	4.21e-25	89.0
	Ccar2g01845	.	29	78	Plant Defensins gene family	AT1G19610	56.0	1.08e-14	63.9
	Ccar2g01850	.	7	77	Plant Defensins gene family	AT1G19610	42.254	1.30e-11	58.5
	Ccar2g01851	.	1	78	Plant Defensins gene family	AT1G19610	51.282	7.12e-25	88.2
	Ccar2g01848	.	20	78	Plant Defensins gene family	AT1G19610	47.541	1.29e-12	60.1
	Ccar2g01852	.	1	78	Plant Defensins gene family	AT1G19610	37.179	1.52e-10	51.2