Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g01850	ATGACCAAAAGGTCGGGTTTTTTCTTTGCATTCCTTTTGCTCCTCTTCGTTTTTGCCCTCTCAGAAATAGAGGAGGCGGCAGCGACACCAAAATTATGTGAAAAGCCAAGCAAAACATCATTCGGGAAATGCGATGAACAGAAGTGCGACAAAAAGTGCATATCTTGGGAGGGTGCAGTCCATGGAGCTTGTCACGCTCGTGAAGCCAAATCTGGTTGCTTCTGCTACTTCGACCATTTCACAGAAAAAAAGACGTTACTACCACCACACAAGCCCCCACCACATAAGCCGCAGTCACCACACAAGCTGCCGCCACCACACAAGCCCCCACCATCACACAAGCCGCCACCACCACACAAGCCGCCACCACCACACAAGCCGCCACCATCACACAAGCCACTGCCACCACACAAGCCCCCACCAAAAAAGCCGTCGCCACCACACGGCCACCACATAAGCCCCCACCGCATAAGCCGAAGCCCCCCACCACACAAGCCTCCACCACCACACAAGCCCCTGCCCCCACACAAGCCGCCACCACCACACAAGCCTCCACCACCACACAAGCCCCCTCCGTCGCCACCGCCGCCACCAAAAGCCAAGCCGCCGCCGCCACCAAAAGCCAAGCCGCCGCCACCAAAAGCCAAGCCACCGCCGCCACCAAAAGCCAAGCCGTCGCCGTCGTCGCCACCAAAAGCCAAGCCGCCGCCACCAAAATCCAAGCCGCCACCACCAAAAGACAAGGCGACACCACCTCCCAAAGACGACTCATCACCTCCACCAAAAGACGAGTCTCCTCCACCTCCTCCTGATGGTGGTTCGTCCCCTCCACCTCCTCCTGATGGTGGTTCGTCCCCTCCTTCTCCTCCTGATGGTGGTTCCTCCCCTCCTCCTCCTCCCGAAGATGGTGGGCCGTCGCCGCCGCCTCCCGAAGGTGGGCCGCCGCCTCCGCCTCCCGAAGGTGGTTCGCCGCCGCCGCCTCCCGAAGATGGTTCGTCGCCGCCGCCGCCTCCCGAAGGTGGTTCATCGCCGCCGCCGCCCCAAGATGGGCCATCGCCACCACCGCCTCCCGAAGACGGTTCGTCACCTGCTCCTCCTCCCCAAGATGCATCGCCTTCACAACCGCCTCCTCCTCCTCCCAAAGATACATTGCCTCCGCCGTTGCCTCCTCCTTCTCCCGAAGACGGGCCTCCGCCTCCACCGCCTCCCGAAGACGGTTCGCCACCACCTCCTCCAGAAGACGCGCCGCCACCTCTGTCGCCCCCTGAAGACGGGCTGCTGCCCTTGCCGCCTCCAGAAGAAGGTTTGCCATTGCCGCCCTCGCCGCCTCCAGAAGAAGGTTCGCCATTGCCGCCCCCGAAGACGGATCTTTTCCGCCTCCTAAAGAGGGGTCATCGTCACCTCCTCCGACTGATAGATGATTGCTGGCTTCTCTCGAAGAAGAAAGGCTTTCGATGGATTATGATTCCCACCGGTACGTGA	1482	61.0	MTKRSGFFFAFLLLLFVFALSEIEEAAATPKLCEKPSKTSFGKCDEQKCDKKCISWEGAVHGACHAREAKSGCFCYFDHFTEKKTLLPPHKPPPHKPQSPHKLPPPHKPPPSHKPPPPHKPPPPHKPPPSHKPLPPHKPPPKKPSPPHGHHISPHRISRSPPPHKPPPPHKPLPPHKPPPPHKPPPPHKPPPSPPPPPKAKPPPPPKAKPPPPKAKPPPPPKAKPSPSSPPKAKPPPPKSKPPPPKDKATPPPKDDSSPPPKDESPPPPPDGGSSPPPPPDGGSSPPSPPDGGSSPPPPPEDGGPSPPPPEGGPPPPPPEGGSPPPPPEDGSSPPPPPEGGSSPPPPQDGPSPPPPPEDGSSPAPPPQDASPSQPPPPPPKDTLPPPLPPPSPEDGPPPPPPPEDGSPPPPPEDAPPPLSPPEDGLLPLPPPEEGLPLPPSPPPEEGSPLPPPKTDLFRLLKRGHRHLLRLIDDCWLLSKKKGFRWIMIPTGT	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g01850	493	Gene3D	-	28	78	IPR036574	-
	Ccar2g01850	493	MobiDBLite	consensus disorder prediction	159	247	-	-
	Ccar2g01850	493	MobiDBLite	consensus disorder prediction	86	455	-	-
	Ccar2g01850	493	SUPERFAMILY	Scorpion toxin-like	31	77	IPR036574	-
	Ccar2g01850	493	PRINTS	Proline rich extensin signature	88	109	-	-
	Ccar2g01850	493	PRINTS	Proline rich extensin signature	111	127	-	-
	Ccar2g01850	493	PRINTS	Proline rich extensin signature	132	149	-	-
	Ccar2g01850	493	PRINTS	Proline rich extensin signature	150	175	-	-
	Ccar2g01850	493	MobiDBLite	consensus disorder prediction	91	142	-	-
	Ccar2g01850	493	MobiDBLite	consensus disorder prediction	262	451	-	-
	Ccar2g01850	493	PANTHER	DEFENSIN-LIKE PROTEIN 1	1	78	-	GO:0006952(PANTHER)
	Ccar2g01850	493	MobiDBLite	consensus disorder prediction	143	158	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g01850	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr2:64804081	Ccar2g01850	Ccar-Chr2:64835730	dispersed
	Ccar	Ccar-Chr2:64835730	Ccar7g00404	Ccar-Chr7:4788414	dispersed
	Ccar	Ccar-Chr2:64835730	Ccar2g01851	Ccar-Chr2:64849087	tandem

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ccar7g00404	.	29	78	Plant Defensins gene family	AT1G19610	54.0	1.64e-13	61.6
	Ccar12g00415	.	10	72	Plant Defensins gene family	AT1G61070	39.189	6.49e-10	49.3
	Ccar17g00399	.	11	78	Plant Defensins gene family	AT1G19610	50.0	1.34e-21	79.3
	Ccar3g00201	.	12	77	Plant Defensins gene family	AT2G02130	35.714	1.34e-11	52.8
	Ccar2g01846	.	26	78	Plant Defensins gene family	AT1G19610	54.717	3.49e-14	65.9
	Ccar2g01847	.	26	78	Plant Defensins gene family	AT1G19610	56.604	1.38e-17	70.1
	Ccar2g01844	.	1	77	Plant Defensins gene family	AT1G19610	49.351	4.21e-25	89.0
	Ccar2g01845	.	29	78	Plant Defensins gene family	AT1G19610	56.0	1.08e-14	63.9
	Ccar2g01850	.	7	77	Plant Defensins gene family	AT1G19610	42.254	1.30e-11	58.5
	Ccar2g01851	.	1	78	Plant Defensins gene family	AT1G19610	51.282	7.12e-25	88.2
	Ccar2g01848	.	20	78	Plant Defensins gene family	AT1G19610	47.541	1.29e-12	60.1
	Ccar2g01852	.	1	78	Plant Defensins gene family	AT1G19610	37.179	1.52e-10	51.2