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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01865 ATGGCAAACGGAAGAACCCTAGATTCTTATACCGTCAATGGCGTTGATAAATCCATAAGACCCGGCGATTGCGTGTTGATGAGGCCACACGATCCATCGAAGCCGTCGTATATAGCGAAAGTGGAGAAGATTGTATCGGACGACAGAGGAAGCAACGTGAAGGTTCACGTACGGTGGTACTACCGGCCAGAGGAAGTAGTCGGCGGTCGGAAACAGTTTCACGGAACCAAAGAAGTATTTCTCTCCGATCACTATGATGTTCAAGGCGCGGATACAATTGAAGGCAAGTGTAAGGTCCACACGTTCAAGAACTATACAAAGCTCGATGCCATTGGTAACGACGATTTCTACAGTCGTTTCCAGTATTACTCTTCCACCGGAGACTTCAATCCCGATAGAATTGCCGTGTACTGCAAATGTGAGATGCCTTACAATCCTGATGACTTAATGATTCAGTGTGATGGCTGCCGTGATTGGTTTCATCCTGCTTGTATAGACATGACAGTGGAGGAGGCTACACAAATGGAGCACTTCTTGTGCCAGAGTTGTTTGTCAGAAGAGCAAAAGGTTCTCCAAAATTCTCATGCTATTTCCAGGCCTGCAGTCATGAAGACACAAAGCGCCGGCGAACGTGATGTACAG 642 47.04 MANGRTLDSYTVNGVDKSIRPGDCVLMRPHDPSKPSYIAKVEKIVSDDRGSNVKVHVRWYYRPEEVVGGRKQFHGTKEVFLSDHYDVQGADTIEGKCKVHTFKNYTKLDAIGNDDFYSRFQYYSSTGDFNPDRIAVYCKCEMPYNPDDLMIQCDGCRDWFHPACIDMTVEEATQMEHFLCQSCLSEEQKVLQNSHAISRPAVMKTQSAGERDVQ 214
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01865 214 ProSiteProfiles Zinc finger PHD-type profile. 135 186 IPR019787 -
Ccar2g01865 214 PANTHER OS08G0421900 PROTEIN 5 200 - -
Ccar2g01865 214 SUPERFAMILY FYVE-PHD zinc finger 125 188 IPR011011 -
Ccar2g01865 214 Gene3D - 2 129 IPR043151 -
Ccar2g01865 214 SMART BAH-4 17 133 IPR001025 GO:0003682(InterPro)
Ccar2g01865 214 ProSitePatterns Zinc finger PHD-type signature. 138 183 IPR019786 -
Ccar2g01865 214 Pfam BAH domain 19 131 IPR001025 GO:0003682(InterPro)
Ccar2g01865 214 ProSiteProfiles BAH domain profile. 17 133 IPR001025 GO:0003682(InterPro)
Ccar2g01865 214 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 130 200 IPR013083 -
Ccar2g01865 214 SMART PHD-3 137 184 IPR001965 -
Ccar2g01865 214 Pfam PHD-finger 138 183 IPR019787 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01865 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
38847 Ccar2g01865 Ccar8g00856
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:65063843 Ccar2g01879 Ccar-Chr2:65228041 dispersed
Ccar Ccar-Chr2:65063843 Ccar2g01867 Ccar-Chr2:65078932 proximal
Ccar Ccar-Chr2:65063843 Ccar8g00856 Ccar-Chr8:22274342 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar8g00068 ACH 1 260 Alfin-like Transcription Factor family AT5G20510 72.243 8.24e-121 343.0
Ccar9g00188 . 1 240 Alfin-like Transcription Factor family AT5G05610 77.5 7.42e-125 352.0
Ccar17g01236 ACH 6 260 Alfin-like Transcription Factor family AT5G20510 70.611 4.90e-124 351.0
Ccar5g00895 . 56 104 Alfin-like Transcription Factor family AT5G26210 85.714 8.88e-15 63.9
Ccar5g00743 . 1 240 Alfin-like Transcription Factor family AT5G05610 80.0 4.18e-126 355.0
Ccar5g00639 . 42 121 Alfin-like Transcription Factor family AT5G20510 86.25 1.89e-36 122.0
Ccar3g01762 ACH 1 260 Alfin-like Transcription Factor family AT5G20510 71.863 1.05e-123 372.0
Ccar3g00892 . 86 121 Alfin-like Transcription Factor family AT5G20510 83.333 2.11e-14 69.7
Ccar3g00617 ACH 1 239 Alfin-like Transcription Factor family AT5G05610 75.1 2.85e-121 343.0
Ccar1g00271 ACH 1 240 Alfin-like Transcription Factor family AT5G05610 78.333 7.15e-127 357.0
Ccar2g01867 . 196 246 Alfin-like Transcription Factor family AT1G14510 41.176 1.27e-07 47.8
Ccar2g01865 ACH 196 249 Alfin-like Transcription Factor family AT1G14510 35.185 9.20e-07 46.6
Ccar2g01243 . 1 152 Alfin-like Transcription Factor family AT1G14510 86.184 7.64e-86 251.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar BAH 1e-21 No_clan TR PHD