Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g01866	ATGGCGGATCAGACGATCGAGAAATGTTCGTCTGAAGTTGGTGATGATGAGAAAAAGCAGAGAATAAAAAAGAATGTTACTGAGGATCCAGAAACCTTCAGCTGTATGCTTCAGCCCTGTCCCGCCAACTCCGATCCTAATTACGTCGGTATTCGTCGTCTTCTTCTGTTTGGCAAGGCTGAATCAGGTGTTCTTCGGCGGAAGGACTGGAGATGCAATGGAAAAGGCTATGTGGCTTATCGTAATTTCATCAACAGGCCAGATAATTGGATAAATTCGCAAATACCGAGTCGCGGTAGCACCCCTGGAGCCAGTGGGCGATGGATACATTCTCCAAGTCAACTCTCCCTTGCGCTTGAGATGGAAAGCTTGAATGGTAGCAAGGACCTGCGAGAGAGCCAAACACTGAGTCGTACTGTTAGTTTTGGTGCAAATTCAAGTGATTTTGAATACCCACGTCGAAAAGCTGAACCTGCATATTCTTTTGTAGGAATGCATTGCATCTTTGATGAGTGCAAAGCCATGGTTTTATGTGCAGTTACTGTTATAAAGTTTGGGCATATGAGTTCTGATATACTTGCCTATGGAGCAACAGATGGAACATTAACAGTTTGCACCGTCTCAGAACCACCTTCCGTCATGAAGAAATTGACTGGGCACTCAAAAGATGTTACAGGTTGGATCAGCTGGATGATCATTCTTTCTCCTGATGCCTGCAAAAATCCTTTCAAGATGGAAAAGTACACATTTAGCTGGAGCACATCACTGTATTATACTTTTAATGAAGCTCAGAAATGCAAAAAATCCAATAAGAATAGGCATTATTGGAAAGATCAGGCTGATTATGTCTTAAATTTTGACTTCACGTTAAACAACCAGTACATTGCATCATCTTCATTGGATAAAACTGTGAGGGTATGGGATATCCCAAAGGGCCTTTGCATTCGAGTAATATATGGGGTTGCTTCCCAGCTTTGTATTCGATTTCATCCTGTGAATAATAACTTTCTTTCAGTCGGCAACGCAAACAGAGAAGCCTCGGTATTCAATTTTAGTACGGGAAGATTAATAAGTAAGATAGTGGTTGACAGTGAGATTACCGCCCTTGATTATGACCATACTGGCCAGTTTATTTTCTGTGGAGATACACAGGGTTCTATATACACAGTTAAAGTAAACTCTCATCAAGGTACCTTGTCTCGGTCTCATCGTACTAGAACTAGCAGCAAGCATAAATCTGAATTCACAACCATCCAGTATAGATCATTTTCTCTGCTGACACAAGGTCCTGTGTTGCTTTCTCTTACTCGAGATGGAAGTTTGTCTTTCTTCAGTGTTTCGTTGGAGATGCAAGGTTATCTGACTCTTCGCTGCTCCCTCCAGTTGGCTCCACGACTTCACAGTATCCGTGCTTCTTTTTGTCCTTTGCTTTCCCTTGAAAAAGGAGAATATATAGTCATTGGAAGCGAGGATGCAACAGTCTATTTTTATGACTTAACTCGTCTGAAGAACACATGCGTGAACAAGCTACAGGGGCATGGATACCCAGTCATTGCAGTTGCATGGAATCATGGTGAGAACTTGTTGGCATCCTCTGATTTTGGTGGCACTGTAATTGTGTGGAAGAGAGAAAAAACAAAGCAGAAGATGTGA	1653	42.17	MADQTIEKCSSEVGDDEKKQRIKKNVTEDPETFSCMLQPCPANSDPNYVGIRRLLLFGKAESGVLRRKDWRCNGKGYVAYRNFINRPDNWINSQIPSRGSTPGASGRWIHSPSQLSLALEMESLNGSKDLRESQTLSRTVSFGANSSDFEYPRRKAEPAYSFVGMHCIFDECKAMVLCAVTVIKFGHMSSDILAYGATDGTLTVCTVSEPPSVMKKLTGHSKDVTGWISWMIILSPDACKNPFKMEKYTFSWSTSLYYTFNEAQKCKKSNKNRHYWKDQADYVLNFDFTLNNQYIASSSLDKTVRVWDIPKGLCIRVIYGVASQLCIRFHPVNNNFLSVGNANREASVFNFSTGRLISKIVVDSEITALDYDHTGQFIFCGDTQGSIYTVKVNSHQGTLSRSHRTRTSSKHKSEFTTIQYRSFSLLTQGPVLLSLTRDGSLSFFSVSLEMQGYLTLRCSLQLAPRLHSIRASFCPLLSLEKGEYIVIGSEDATVYFYDLTRLKNTCVNKLQGHGYPVIAVAWNHGENLLASSDFGGTVIVWKREKTKQKM	550

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g01866	550	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	276	309	-	-
	Ccar2g01866	550	ProSitePatterns	Trp-Asp (WD) repeats signature.	295	309	IPR019775	-
	Ccar2g01866	550	PANTHER	WD REPEAT PROTEIN 26-RELATED	157	230	IPR051350	GO:0005634(PANTHER)\|GO:1990841(PANTHER)
	Ccar2g01866	550	ProSiteProfiles	Trp-Asp (WD) repeats profile.	510	550	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	Gene3D	-	471	550	IPR015943	GO:0005515(InterPro)
	Ccar2g01866	550	Pfam	WD domain, G-beta repeat	281	308	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	Pfam	WD domain, G-beta repeat	505	541	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	Gene3D	-	165	326	IPR015943	GO:0005515(InterPro)
	Ccar2g01866	550	ProSiteProfiles	Trp-Asp (WD) repeats profile.	276	317	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	MobiDBLite	consensus disorder prediction	1	20	-	-
	Ccar2g01866	550	Gene3D	-	327	470	IPR015943	GO:0005515(InterPro)
	Ccar2g01866	550	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	510	550	-	-
	Ccar2g01866	550	SMART	WD40-4	269	308	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	SMART	WD40-4	503	542	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	SMART	WD40-4	462	498	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	SMART	WD40-4	170	206	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	SMART	WD40-4	311	350	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	SMART	WD40-4	353	391	IPR001680	GO:0005515(InterPro)
	Ccar2g01866	550	SUPERFAMILY	WD40 repeat-like	180	544	IPR036322	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g01866	K24739	WD repeat-containing protein 13

Event-related genes

Select	Gene_1	Gene_2	Event_name
	38023	Ccar17g00380	Ccar2g01866

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr2:65069013	Ccar6g00647	Ccar-Chr6:17483615	dispersed
	Ccar	Ccar-Chr17:4382734	Ccar2g01866	Ccar-Chr2:65069013	wgd