AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01873 ATGGATGAGGTGATCACCATAGCCGATGCGGCGTACCGCGCTAGTAAGGTTACGGGGACGGCGGCGATGCCTTCATCTTCAGTTCCGGTCCTCCCCTACAGTGTTCCGCTGTTATCAGCATTCCTTGCCTTCGCTATTGCGCAATTCCTCAAGGTCATCACCACCTGGTATAAGGAAAAGAGATGGGATCCTAAAAAGATTATGGGCTCGGGTGGAATGCCATCATCTCATTCTTCAACTGTTGTGGCACTGGCAGTATCCATAGGTCTACATGAAGGGGTCGAAGCATCAACTTTCGCGATTGCTGTTGTCTTGGCTTTTATTGTTATGTATGATGCGTCTGGAGTCAGACTCCATGCCGGACGCCAAGCTGAGGTGCTGAACCAGATTGTCTGTGAATTTCCTCCGGAGCACCCGTTATCAACATCCAGACCTCTGCGTGATTCTCTTGGGCATACTCCGTTACAGGTGGTTGCAGGGGCCATGTTGGGATGCATAGTCGCATTCGGGATTAAAGTGTCCGGCTAA 528 50.95 MDEVITIADAAYRASKVTGTAAMPSSSVPVLPYSVPLLSAFLAFAIAQFLKVITTWYKEKRWDPKKIMGSGGMPSSHSSTVVALAVSIGLHEGVEASTFAIAVVLAFIVMYDASGVRLHAGRQAEVLNQIVCEFPPEHPLSTSRPLRDSLGHTPLQVVAGAMLGCIVAFGIKVSG 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01873 175 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 10 171 IPR003832 -
Ccar2g01873 175 CDD PAP2-like 37 171 - -
Ccar2g01873 175 Pfam Divergent PAP2 family 36 167 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01873 K09775 uncharacterized protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr12:630394 Ccar2g01873 Ccar-Chr2:65150754 dispersed
Ccar Ccar-Chr16:21887951 Ccar2g01873 Ccar-Chr2:65150754 dispersed
Ccar Ccar-Chr2:65150754 Ccar6g00578 Ccar-Chr6:16549945 dispersed
Ccar Ccar-Chr2:65150754 Ccar15g00829 Ccar-Chr15:13857275 transposed