Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g01875	ATGGATTTTGAATTGAGAAGAGCGAGAGAGAAATTAGAGAAAGAGCAAAAGGACAGGAAAGAGAAGGCTAAGTTAAGGTTGGAAAGAGAGAGAAAAGCCAAACAAGAAGCTCTTCGTCAGCGTGAGGCGATCGAGGCTGCTCAACGATCTCGTAGAATCGATGCCATGGAAGCCCAACTTAAGGCAGACCAGCAGATGGAAGAAAGTATACTTGCTGGGAGAGGGATTTCTTTTTATCGTGCTCTAGAGGCTGCACCGTTTGAGGGTTCTGGAGATAAGATAAAACTTCCCCCTTCCTGTTTCACTGAATTATCCGAGCAAGGGGCATTTGACAAGGGTCCTCTGCATTTCCAGTTGTCAGTAGTTCGCCAAGATGAATCTTCTTCACAAGCAAAGCCTGCTGAAAGTCTAGGCCATGGGTCAACCCATGCTGGCGTCTTAGAGTTCACTGCAGAAGAAGGTTCTGTCGGGATCCCTCCTCACATTTGGAACAACTTATACTCCAAACAAGATCCCAAAACTCCTTTAGTTGAAGTACGATACGTGTGGCTAGCAAAAGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCCAACCACAAAGCTGTCCTTGAAACAACCCTTCGCCAGCATGCAACTCTTTCTCAAGATGATGTTTTGACGGTCAAACATGGTGTATTGACTTATCATCTGCGTGTTCTTGAGCTGAAACCGTCACCAAGTGTATCTGTTCTTGAAACAGATATCGAAGTTGACATTGTGGGTCCTGATTCACTTCCCGAAAGAAGCAACCAGCATGTGCTGAAACCACTGACCTTTGGGAAATCTGAATCTGGAGTTATAAATGAAAAAGAGTACATTTATTACAAATTTTCAATAGATAATGATACATGGGGAAGAATTTCTTCTGGGGATGCTGAAATCGAAGTAAAACTAGATTCTGAGGCAAAAGATGGAGATACCGATCTATATCTTTCACAGCACCCACTCTTGTTTCCGAACACCCATCAGCATGGTTGGTCTTCTCATGATATGGGTTCAAAATCTTTGGTTCTTGGCTCCAAAGATCACAACTTTGGTGCTGGTACTTACAGTGTTGGTGTATATGGGTTCAAAGGAACCACAAAGTATCATGTTTTAGTAACTTTGCAAGATTCTTCCAACACAAAGGTGGGACAACAACCTGTGCCATCTTCTTCACAGGGGTCAACAGCAGATACTGTAGAGTGCAGCAATTGCAAGCATTATATACCCTTGAGAACCATAGCACTTCATGAGGCATATTGTAGAAGACATAATGTCATCTGTCAGCATGCTGGTTGTGGTGTTGTTCTCAGGATCGAAGAGGCCAAGAACCATGTGCACTGCGAGAAATGTGGACTAGCTTTTCATAGTGACGAGATAGGGAAACATATGAAAGTGTTCCATGAGCCGCTATGCTGTCCGTGTGGTGCCATTCTTGAGAAAACACAGATGGTGCAACACCAGAACTCAGATTGCCCGTTACGTCTTGTTACATGTCGGTTTTGTGGGGACATGGTTGAAGCTGGGTCGTTGGCTGTTGATGCACGTGATCGGTTAAGGGGACTCTCAGAGCATGAGAGTCTTTGTGGGTCGAGAACTGCTCCTTGCGACTCTTGCGGTCGGGCAGTCATGTTGAAAGAAATGGATATTCATCAAATAGCTGTTCACCAGAAGAACTGA	1719	44.27	MDFELRRAREKLEKEQKDRKEKAKLRLERERKAKQEALRQREAIEAAQRSRRIDAMEAQLKADQQMEESILAGRGISFYRALEAAPFEGSGDKIKLPPSCFTELSEQGAFDKGPLHFQLSVVRQDESSSQAKPAESLGHGSTHAGVLEFTAEEGSVGIPPHIWNNLYSKQDPKTPLVEVRYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTYHLRVLELKPSPSVSVLETDIEVDIVGPDSLPERSNQHVLKPLTFGKSESGVINEKEYIYYKFSIDNDTWGRISSGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKSLVLGSKDHNFGAGTYSVGVYGFKGTTKYHVLVTLQDSSNTKVGQQPVPSSSQGSTADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHAGCGVVLRIEEAKNHVHCEKCGLAFHSDEIGKHMKVFHEPLCCPCGAILEKTQMVQHQNSDCPLRLVTCRFCGDMVEAGSLAVDARDRLRGLSEHESLCGSRTAPCDSCGRAVMLKEMDIHQIAVHQKN	572

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g01875	572	CDD	UDM1-RNF168-RNF169-like	4	65	-	-
	Ccar2g01875	572	PANTHER	UBIQUITIN FUSION DEGRADATON PROTEIN 1	1	544	IPR004854	GO:0006511(InterPro)\|GO:0030433(PANTHER)\|GO:0031593(PANTHER)\|GO:0034098(PANTHER)\|GO:0071712(PANTHER)
	Ccar2g01875	572	Gene3D	-	280	412	-	-
	Ccar2g01875	572	Pfam	TRAFD1-XAF1, zinc finger	535	564	IPR049439	-
	Ccar2g01875	572	Pfam	Ubiquitin fusion degradation protein UFD1	90	261	IPR004854	GO:0006511(InterPro)
	Ccar2g01875	572	Coils	Coil	5	50	-	-
	Ccar2g01875	572	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	480	531	IPR013083	-
	Ccar2g01875	572	Gene3D	-	186	259	-	-
	Ccar2g01875	572	Gene3D	-	73	184	IPR042299	-
	Ccar2g01875	572	SUPERFAMILY	TRAF domain-like	413	469	-	-
	Ccar2g01875	572	MobiDBLite	consensus disorder prediction	1	24	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g01875	K14016	ubiquitin fusion degradation protein 1

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr2:65166859	Ccar1g00357	Ccar-Chr1:3919286	transposed