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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01879 ATGGCGAAGACGAAACCCGGGAAGAAAGATTTAGATTCCTACTCTATCAAGGGCACCAACAAAGTCGTTAGATCTGGGGATTGTGTTTTGATGAGACCGGCTGATTCGGATAAGCCTCCCTATGTGGCACGAGTGGAGAAGCTTGAGGCTGATCACCGGAACAATGTGAAGGTTAGGGTTAGGTGGTATTACCGGCCGGAGGAGTCAATTGGAGGGAGGAGGCAATTTCATGGTGTTAAGGAGCTGTTTTTGTCTGATCATTACGATATGCAGAGTGCACATACGATCGAAGGGAAGTGTATAGTTCATTCTTTTAAGAACTACACAAAGCTCGACAATGTTGGTACCGAGGACTATTTCTGTCGCTTTGAATACAAGGCTGCTACTGGGGGTTTCACCCCTGATCGTGTTGCTGTGTACTGCAAGTGTGAGATGCCCTACAACCCGGATGATTTGATGGTGCAATGTGAAGGATGCAAGGACTGGTTTCATCCATCTTGTATGGGTATGACAATTGAAGAGGCGAAGAAATTGGACCAGTTTTTGTGCTCTGATTGTTCCTCTGATGATGATGGAAAAGGATCATTGAACTCGTTTCCAATATCACCATCTGCTGAGGCTAAGGTGGAGGTGAAGCGCAGAAAGCGATAG 651 46.24 MAKTKPGKKDLDSYSIKGTNKVVRSGDCVLMRPADSDKPPYVARVEKLEADHRNNVKVRVRWYYRPEESIGGRRQFHGVKELFLSDHYDMQSAHTIEGKCIVHSFKNYTKLDNVGTEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDQFLCSDCSSDDDGKGSLNSFPISPSAEAKVEVKRRKR 216
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01879 216 CDD BAH-BAHCC1 22 156 - -
Ccar2g01879 216 PANTHER OS08G0421900 PROTEIN 1 208 - -
Ccar2g01879 216 SMART PHD-3 140 187 IPR001965 -
Ccar2g01879 216 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 133 198 IPR013083 -
Ccar2g01879 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Ccar2g01879 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Ccar2g01879 216 Pfam BAH domain 23 134 IPR001025 GO:0003682(InterPro)
Ccar2g01879 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Ccar2g01879 216 SUPERFAMILY FYVE-PHD zinc finger 130 188 IPR011011 -
Ccar2g01879 216 SMART BAH-4 21 136 IPR001025 GO:0003682(InterPro)
Ccar2g01879 216 FunFam Chromatin remodeling protein EBS 1 132 - -
Ccar2g01879 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682(InterPro)
Ccar2g01879 216 Gene3D - 1 132 IPR043151 -
Ccar2g01879 216 Pfam PHD-finger 141 186 IPR019787 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01879 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
38018 Ccar17g00354 Ccar2g01879
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:65063843 Ccar2g01879 Ccar-Chr2:65228041 dispersed
Ccar Ccar-Chr2:65228041 Ccar8g00856 Ccar-Chr8:22274342 dispersed
Ccar Ccar-Chr10:463783 Ccar2g01879 Ccar-Chr2:65228041 transposed
Ccar Ccar-Chr17:3897679 Ccar2g01879 Ccar-Chr2:65228041 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00540 . 4 456 Core DNA Replication Machinery family AT4G29910 57.359 0.0 517.0
Ccar14g00199 . 61 272 Core DNA Replication Machinery family AT5G26680 28.571 1.74e-15 77.8
Ccar14g00134 . 1 306 Core DNA Replication Machinery family AT5G26680 79.085 0.0 511.0
Ccar11g01334 . 888 1283 Core DNA Replication Machinery family AT1G08840 27.888 5.21e-32 134.0
Ccar11g01328 . 172 249 Core DNA Replication Machinery family AT5G08020 73.077 2.32e-35 124.0
Ccar11g00546 . 75 759 Core DNA Replication Machinery family AT3G09660 58.465 0.0 895.0
Ccar11g00040 . 243 455 Core DNA Replication Machinery family AT4G19130 23.451 1.12e-08 54.7
Ccar16g00639 . 1 831 Core DNA Replication Machinery family AT5G45400 47.468 0.0 741.0
Ccar7g00515 . 2 349 Core DNA Replication Machinery family AT5G27740 34.069 1.50e-70 234.0
Ccar7g00455 . 153 776 Core DNA Replication Machinery family AT1G08130 35.0 5.69e-124 402.0
Ccar8g01045 . 1 193 Core DNA Replication Machinery family AT1G80190 58.549 1.20e-82 241.0
Ccar8g00856 ACH 245 341 Core DNA Replication Machinery family AT4G14700 26.263 9.17e-08 50.1
Ccar8g00860 . 1 847 Core DNA Replication Machinery family AT2G16440 66.055 0.0 1090.0
Ccar8g00310 . 190 489 Core DNA Replication Machinery family AT5G08020 24.684 1.78e-17 81.6
Ccar8g00221 . 1 716 Core DNA Replication Machinery family AT4G02060 84.078 0.0 1271.0
Ccar8g00060 . 1 638 Core DNA Replication Machinery family AT2G06510 70.846 0.0 939.0
Ccar9g00991 . 23 495 Core DNA Replication Machinery family AT1G07270 50.296 1.11e-154 449.0
Ccar9g00751 . 12 538 Core DNA Replication Machinery family AT2G31270 39.292 1.42e-90 288.0
Ccar9g00700 . 70 164 Core DNA Replication Machinery family AT2G24490 30.088 1.16e-08 51.2
Ccar15g01047 . 1 332 Core DNA Replication Machinery family AT1G63160 90.663 0.0 622.0
Ccar15g00921 . 1 828 Core DNA Replication Machinery family AT5G45400 50.117 0.0 791.0
Ccar15g00831 . 4 492 Core DNA Replication Machinery family AT1G67630 53.571 0.0 538.0
Ccar15g00769 . 20 928 Core DNA Replication Machinery family AT1G44900 76.982 0.0 1404.0
Ccar15g00727 . 1 586 Core DNA Replication Machinery family AT3G25100 70.608 0.0 844.0
Ccar15g00688 . 1 369 Core DNA Replication Machinery family AT1G77470 73.387 0.0 530.0
Ccar15g00256 . 161 234 Core DNA Replication Machinery family AT2G31270 48.649 2.96e-18 80.1
Ccar12g01368 . 17 396 Core DNA Replication Machinery family AT2G20980 50.75 1.08e-123 361.0
Ccar12g01097 . 9 250 Core DNA Replication Machinery family AT1G21690 24.138 3.52e-13 70.1
Ccar12g00966 . 538 603 Core DNA Replication Machinery family AT5G08020 48.485 1.64e-17 72.8
Ccar12g00797 . 867 956 Core DNA Replication Machinery family AT1G08840 31.111 5.32e-06 42.4
Ccar12g00789 . 1 1294 Core DNA Replication Machinery family AT1G08840 49.235 0.0 1241.0
Ccar12g00468 . 3 607 Core DNA Replication Machinery family AT5G22010 58.079 0.0 641.0
Ccar12g00430 . 826 1288 Core DNA Replication Machinery family AT1G08840 29.905 1.98e-43 166.0
Ccar4g00769 . 1 518 Core DNA Replication Machinery family AT2G29680 44.337 3.28e-152 450.0
Ccar4g00354 . 1 601 Core DNA Replication Machinery family AT5G08020 64.062 0.0 844.0
Ccar4g00270 . 1014 1294 Core DNA Replication Machinery family AT1G08840 28.475 2.90e-18 89.4
Ccar4g00180 . 2 972 Core DNA Replication Machinery family AT1G77320 49.296 0.0 887.0
Ccar10g01404 . 33 241 Core DNA Replication Machinery family AT1G77470 26.222 1.90e-07 51.2
Ccar10g00983 . 48 767 Core DNA Replication Machinery family AT1G08130 65.479 0.0 962.0
Ccar10g00816 . 388 610 Core DNA Replication Machinery family AT5G22010 26.316 4.99e-09 58.2
Ccar10g00313 . 1 275 Core DNA Replication Machinery family AT2G24490 43.262 9.41e-75 228.0
Ccar10g00276 . 190 493 Core DNA Replication Machinery family AT5G08020 24.138 3.67e-12 65.5
Ccar10g00221 . 423 532 Core DNA Replication Machinery family AT5G08020 27.273 3.01e-08 53.1
Ccar10g00039 . 245 337 Core DNA Replication Machinery family AT4G14700 29.032 1.96e-10 57.4
Ccar17g00874 . 179 269 Core DNA Replication Machinery family AT1G77320 34.653 7.68e-07 50.1
Ccar17g00561 . 14 329 Core DNA Replication Machinery family AT2G14050 59.202 2.01e-131 387.0
Ccar17g00560 . 403 644 Core DNA Replication Machinery family AT2G14050 59.211 4.73e-110 332.0
Ccar17g00354 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 3.51e-10 57.8
Ccar5g00930 . 1 195 Core DNA Replication Machinery family AT5G26680 25.0 2.23e-06 48.1
Ccar13g01408 . 2 123 Core DNA Replication Machinery family AT5G49010 61.6 7.27e-50 158.0
Ccar13g01346 . 797 928 Core DNA Replication Machinery family AT1G44900 42.424 5.09e-19 80.5
Ccar13g01224 . 1 299 Core DNA Replication Machinery family AT5G26680 24.432 7.43e-14 71.2
Ccar13g01170 . 1134 1288 Core DNA Replication Machinery family AT1G08840 31.847 1.42e-14 71.6
Ccar13g01142 . 795 928 Core DNA Replication Machinery family AT1G44900 57.463 3.77e-40 140.0
Ccar13g01123 . 1154 1282 Core DNA Replication Machinery family AT1G08840 33.083 2.42e-13 64.3
Ccar13g00396 . 1 182 Core DNA Replication Machinery family AT3G55490 50.549 2.52e-59 180.0
Ccar13g00238 . 1 282 Core DNA Replication Machinery family AT1G26840 64.561 1.24e-127 363.0
Ccar13g00016 . 1 446 Core DNA Replication Machinery family AT1G67320 60.934 0.0 588.0
Ccar3g01829 . 1014 1289 Core DNA Replication Machinery family AT1G08840 30.363 1.87e-22 103.0
Ccar3g01373 . 3 311 Core DNA Replication Machinery family AT1G21690 26.786 2.01e-19 89.0
Ccar3g01252 . 403 549 Core DNA Replication Machinery family AT5G08020 48.649 3.59e-45 154.0
Ccar3g01251 . 189 396 Core DNA Replication Machinery family AT5G08020 56.19 5.08e-73 229.0
Ccar3g00287 . 107 248 Core DNA Replication Machinery family AT2G31270 47.887 1.52e-27 115.0
Ccar3g00294 . 1 124 Core DNA Replication Machinery family AT1G09815 52.419 4.66e-43 135.0
Ccar3g00296 . 31 733 Core DNA Replication Machinery family AT5G16690 46.621 0.0 592.0
Ccar3g00087 . 883 1294 Core DNA Replication Machinery family AT1G08840 27.651 4.65e-39 156.0
Ccar1g02586 . 13 329 Core DNA Replication Machinery family AT1G21690 25.0 2.01e-18 85.5
Ccar1g02396 . 18 526 Core DNA Replication Machinery family AT5G22110 58.984 0.0 588.0
Ccar1g02225 . 1029 1225 Core DNA Replication Machinery family AT1G08840 46.193 1.26e-39 147.0
Ccar1g02224 . 503 863 Core DNA Replication Machinery family AT1G08840 41.889 8.31e-75 264.0
Ccar1g01539 . 1010 1108 Core DNA Replication Machinery family AT1G08840 37.255 4.33e-06 49.3
Ccar1g01535 . 1010 1263 Core DNA Replication Machinery family AT1G08840 26.786 6.53e-15 76.6
Ccar1g01183 . 111 192 Core DNA Replication Machinery family AT4G02110 39.024 1.45e-13 71.6
Ccar1g01181 . 11 1522 Core DNA Replication Machinery family AT5G67100 52.218 0.0 1535.0
Ccar1g01071 . 145 251 Core DNA Replication Machinery family AT5G26680 38.318 2.69e-11 65.9
Ccar1g01079 . 1127 1245 Core DNA Replication Machinery family AT4G02110 29.839 1.46e-06 50.1
Ccar1g00811 . 16 809 Core DNA Replication Machinery family AT4G14700 61.665 0.0 989.0
Ccar1g00754 . 1 354 Core DNA Replication Machinery family AT5G27740 88.136 0.0 661.0
Ccar1g00610 . 1 296 Core DNA Replication Machinery family AT2G25100 66.667 3.35e-139 392.0
Ccar2g02307 . 1 801 Core DNA Replication Machinery family AT1G79150 50.657 0.0 759.0
Ccar2g01879 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 3.98e-10 57.0
Ccar2g01580 . 12 360 Core DNA Replication Machinery family AT2G37560 55.143 9.76e-137 390.0
Ccar2g01575 . 934 1260 Core DNA Replication Machinery family AT1G08840 26.121 2.14e-18 88.6
Ccar2g01486 . 1 831 Core DNA Replication Machinery family AT5G44635 71.986 0.0 1234.0
Ccar2g01369 . 841 928 Core DNA Replication Machinery family AT1G44900 45.455 2.33e-16 72.8
Ccar2g01222 . 13 249 Core DNA Replication Machinery family AT1G21690 26.154 8.65e-11 63.2
Ccar2g01188 . 831 1269 Core DNA Replication Machinery family AT1G08840 26.471 3.42e-32 134.0
Ccar2g00740 . 1 278 Core DNA Replication Machinery family AT3G02920 48.958 9.81e-91 270.0
Ccar2g00734 . 406 778 Core DNA Replication Machinery family AT1G08130 25.61 1.68e-26 115.0
Ccar2g00530 . 1 106 Core DNA Replication Machinery family AT4G18590 65.094 3.97e-51 155.0
Ccar2g00263 . 1 596 Core DNA Replication Machinery family AT3G25100 72.167 0.0 871.0
Ccar2g00027 . 1053 1322 Core DNA Replication Machinery family AT4G02110 63.37 1.59e-114 388.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar BAH 2.3e-23 No_clan TR PHD