AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01894 ATGGAGTTTTTAGTTGTTTTCACTTTGCTCTTCATGCAAATCTACACAATCGGAGCCAACATCCCGGCGGTGATTGTGTTCGGTGACTCCTCTGTAGATGCTGGAAACAACAACCAAATCCGAACGGTTTTGAAGAGCAATTTCAAGCCTTACGGTCGTGATTTTTTCGGTGGAAAAGCTACCGGAAGATTCTCCAATGGACGCGTTCCGCCTGATTTTATATCGGAGTCGTTTGGTTTGCGACCGTATGTACCGGCTTATTTGGATCTGGCGTATAACATATCGGATTTTGCTACTGGCGTTTGTTTTGCGTCTGCTGGTACAGGTTACGACAATGCGACATCTGCTGTGCTTTCAGTGATACCTCTATGGAAGGAGGTGGAATACTATAAGGACTACCAAAGGAAACTAAGAGGCTATTTGGGTGATCAAAAGGCCAATACCATTCTATCTGAAGCAGTTTACCTTATAAGCATGGGCACCAATGATTTCCTTGAGAACTACTACACACTTCCCAACAGAAAATCTCAATACAATGTTAACCAATACCAAGATTATCTTAGAGTCATCGCCGAAAGCTTCATCAAGGAGCTCTACAGCCTTGGTGCACGTAAGATTTCCCTCGGAGGTCTTCCTCCGATGGGTTGTTTGCCACTAGAGCGAACAACCAGTTTCATAAATGGAAAAGGAGATACATGCAACGATGAATATAACAAGGTGGCATTGGCTTTCAATGGGAAGTTATACGGTATGGTGAAGAGGTTGAATGGCGAGCTTTCGGGGAGCCAAATCGTCTTCTCTAATCCGTATGCCATTTTCCAGCAAATTGTCCGGAAACCTTCCAGTTTCGGATTCGAGACGGCAGCAATAGCGTGTTGTTCAACAGGACTATTCGAGATGGGATATATGTGTGATCAATATAATCCGTTCACCTGCTCCGATGCCAATAGATACGTTTTCTGGGATTCTTTCCATCCTTCTGAAAAAACCAATCGTATCATATCTGATCACTTGTTCAAAACCGTTCTTTCTAAATTTTTACCCTAA 1047 43.27 MEFLVVFTLLFMQIYTIGANIPAVIVFGDSSVDAGNNNQIRTVLKSNFKPYGRDFFGGKATGRFSNGRVPPDFISESFGLRPYVPAYLDLAYNISDFATGVCFASAGTGYDNATSAVLSVIPLWKEVEYYKDYQRKLRGYLGDQKANTILSEAVYLISMGTNDFLENYYTLPNRKSQYNVNQYQDYLRVIAESFIKELYSLGARKISLGGLPPMGCLPLERTTSFINGKGDTCNDEYNKVALAFNGKLYGMVKRLNGELSGSQIVFSNPYAIFQQIVRKPSSFGFETAAIACCSTGLFEMGYMCDQYNPFTCSDANRYVFWDSFHPSEKTNRIISDHLFKTVLSKFLP 348
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01894 348 Pfam GDSL-like Lipase-Acylhydrolase 24 338 IPR001087 GO:0016788(InterPro)
Ccar2g01894 348 SUPERFAMILY SGNH hydrolase 137 345 - -
Ccar2g01894 348 Gene3D SGNH hydrolase 15 345 IPR036514 -
Ccar2g01894 348 PANTHER GDSL ESTERASE-LIPASE EXL3 12 338 IPR050592 -
Ccar2g01894 348 FunFam GDSL esterase-lipase APG 15 343 - -
Ccar2g01894 348 CDD SGNH-plant-lipase-like 22 339 IPR035669 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01894 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:65475392 Ccar3g00269 Ccar-Chr3:2781419 dispersed
Ccar Ccar-Chr2:65475392 Ccar17g00098 Ccar-Chr17:952876 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00195 . 21 290 Pollen Coat Proteome gene family AT1G75930 39.706 1.51e-51 172.0
Ccar14g00155 . 5 114 Pollen Coat Proteome gene family AT1G75930 37.815 2.73e-17 77.0
Ccar14g00107 . 84 205 Pollen Coat Proteome gene family AT1G75910 29.921 7.94e-11 57.8
Ccar14g00108 . 89 330 Pollen Coat Proteome gene family AT1G75910 36.187 3.15e-41 144.0
Ccar11g00703 . 28 338 Pollen Coat Proteome gene family AT1G75930 27.215 8.06e-23 95.5
Ccar7g00752 . 28 255 Pollen Coat Proteome gene family AT4G20670 27.801 7.48e-16 72.8
Ccar9g00950 ACH 19 342 Pollen Coat Proteome gene family AT1G75910 34.925 1.80e-61 197.0
Ccar12g01080 ACH 204 326 Pollen Coat Proteome gene family AT1G75930 33.077 2.22e-11 61.2
Ccar12g00872 . 24 334 Pollen Coat Proteome gene family AT1G75930 29.213 1.24e-26 107.0
Ccar12g00841 . 28 340 Pollen Coat Proteome gene family AT1G75910 36.308 4.69e-62 201.0
Ccar12g00835 ACH 6 336 Pollen Coat Proteome gene family AT1G75910 25.414 1.56e-15 74.7
Ccar12g00475 . 22 113 Pollen Coat Proteome gene family AT1G75910 35.052 2.42e-06 46.2
Ccar12g00283 . 3 332 Pollen Coat Proteome gene family AT1G75910 27.248 5.12e-26 105.0
Ccar10g00145 . 13 342 Pollen Coat Proteome gene family AT1G75930 33.529 8.40e-55 182.0
Ccar10g00129 . 9 327 Pollen Coat Proteome gene family AT1G75910 37.237 1.21e-60 196.0
Ccar10g00124 . 7 343 Pollen Coat Proteome gene family AT1G75910 33.903 2.73e-59 193.0
Ccar17g00098 . 1 290 Pollen Coat Proteome gene family AT1G75910 35.862 4.45e-50 179.0
Ccar5g00309 ACH 18 338 Pollen Coat Proteome gene family AT1G75910 35.152 8.15e-64 204.0
Ccar13g00708 . 11 328 Pollen Coat Proteome gene family AT1G75910 25.581 3.37e-19 85.1
Ccar13g00384 . 105 334 Pollen Coat Proteome gene family AT1G75910 29.752 1.51e-26 105.0
Ccar3g00269 . 24 330 Pollen Coat Proteome gene family AT1G75910 41.214 1.16e-73 230.0
Ccar1g02467 . 25 338 Pollen Coat Proteome gene family AT1G75910 36.624 9.48e-61 199.0
Ccar1g02466 . 25 291 Pollen Coat Proteome gene family AT1G75910 38.951 1.25e-56 199.0
Ccar1g02369 . 83 180 Pollen Coat Proteome gene family AT1G75910 32.323 3.11e-08 48.5
Ccar2g01894 . 9 338 Pollen Coat Proteome gene family AT1G75910 37.427 8.44e-70 220.0