AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01897 ATGCGATTCTCCATGGCAGTCACAAGCTCTGGGTTCCCATCTCTTCCCCCATTTCACCAATCCACCTCCCACCCCCTTTCTTACAAACATCCACCTATAATTACACTTCAGAAACCAATAAAACCCCACGATTCTTGTATAAAATCGGTAAACAATTCTGGGTTTCTATCAGCAATCGGGAACGCAATTGAAGAACAGGAGTATAGGAAAGCTAGGGCCGAGGTTATCCGAAAAGGGACAGGGTTAGAAGGTTACACGATTGAGGGTATTTCAATTGGGGGTCATGAAACTTGTGTTATTGTTCCTGAATTCAAGTGTGCATTTGATATCGGAAGGTGCCCAGCAAGAGCCGTTGCCATGAATTTCTTGTTTATTACTCATGCTCACCTTGATCACATTGGTGGGCTACCGATGTATGTTGCAACTCGTGGTCTGTACAGCTTGAGCCCTCCAACTGTATTTGTGCCTCCTTCCATTAAAGAAGATGTTGAAAATTTGATGGAGCTTCACAGGAAGATGGGTCAGGTGGAGTTAAATCTTGATTTGGTTGCTTTGGATGTAGGAGAAACATACGAGCTACGAAACGACCTTGTTGTGCGCCCGTTTAAAACTCATCACGTAGTCCCCAGTCAGGCGACCTTTTTGGACGAGAAATGCAATATCGAGCATGCACGAGAGCATGGTCACATGCATATTGATGAGATTACCGAGCACGCTAAGTGGATTAGGAACAAAGCAATTCTTTTGACTCATTTCTCCTCTCGCTACCATATCGAGGATATACGTCAAGCTGCGGCAAAGTTGCAGTCGAAGATCCAAGGTAAAGTGGTTCCGCTTACGGAAGGTTTTAGATCAATGTATTCGGCATAG 870 44.6 MRFSMAVTSSGFPSLPPFHQSTSHPLSYKHPPIITLQKPIKPHDSCIKSVNNSGFLSAIGNAIEEQEYRKARAEVIRKGTGLEGYTIEGISIGGHETCVIVPEFKCAFDIGRCPARAVAMNFLFITHAHLDHIGGLPMYVATRGLYSLSPPTVFVPPSIKEDVENLMELHRKMGQVELNLDLVALDVGETYELRNDLVVRPFKTHHVVPSQATFLDEKCNIEHAREHGHMHIDEITEHAKWIRNKAILLTHFSSRYHIEDIRQAAAKLQSKIQGKVVPLTEGFRSMYSA 289
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01897 289 SUPERFAMILY Metallo-hydrolase-oxidoreductase 120 283 IPR036866 -
Ccar2g01897 289 Gene3D - 85 211 IPR036866 -
Ccar2g01897 289 Gene3D - 212 284 IPR036866 -
Ccar2g01897 289 PANTHER TRNASE Z TRZ1 211 283 - -
Ccar2g01897 289 Pfam Beta-lactamase superfamily domain 119 210 IPR001279 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01897 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:65516397 Ccar3g01235 Ccar-Chr3:32717964 dispersed