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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01929 ATGGCTACACAAATCAGTCCCTGTTCTTCATCTTCCACCACCTTCCCACCTTCTTCACTTAATCAAGACACCTTTTCTTCTGCAAAATTCTTCAATTTCTCAACAAAATCATCTTCCTCCAGATGGGTTTTCAAGATTCACTCCAGAATCAATCCCAAAAACCAGTTTGAACTCAAATCCTCAAATGGGTATCCTCTTAACGCGATTTCGTTGCAGGATGTCGGTTCAAACAGTAATATGAATCAATCGTCTATCAAACCGCTCAGACGCCTGTTCTTGATTTCCTGTTATCATTGTCTGCTGGCTTTTCGAGTAGGTGCAGCAGAGATGCCACTGGCAAAAGAGCTTGTGTCACGAGAACAAGCCGAATCCAATCTTAGTGTAACCATTGTGGGTGCTTCAGGTGATCTTGCCAAGAAGAAGATCTTTCCGGCACTTTTTGCGCTCTTTTACGAAGATTGTTTACCTCAGAATTTTACCATATTTGGGTATGCCCGAACCAAAATGACCGATGAGGAGCTGAGGGAGATGATTAGTAGAACGTTAACGTGCAGAATCGATAAGAGAGAGAACTGCGGTGACAAAATGGAAGAGTTTCTTGGAAGATGTTTTTACCATTCGGGTCAATACAACTCTGAGGAACATTTTGCAGAATTGGACAGTAAGCTGAAACAGAAAGAGGGTGGAAAAGTGTCGAATAGATTGTTTTACTTGTCGATACCTCCAGACATTTTTGTGGATGTGGTACGGTGTGCCAGCGGCAAAGCTTCTTCCAAGAACGGGTGGACAAGGGTAATTGTGGAAAAACCATTTGGTCGCGATGCAGAATCATCTGGAGAGCTAACAAGAAGCCTGAAACAGTACTTAGCTGAGGATCAAATCTTTAGGTATGTCCTGTGA 900 42.78 MATQISPCSSSSTTFPPSSLNQDTFSSAKFFNFSTKSSSSRWVFKIHSRINPKNQFELKSSNGYPLNAISLQDVGSNSNMNQSSIKPLRRLFLISCYHCLLAFRVGAAEMPLAKELVSREQAESNLSVTIVGASGDLAKKKIFPALFALFYEDCLPQNFTIFGYARTKMTDEELREMISRTLTCRIDKRENCGDKMEEFLGRCFYHSGQYNSEEHFAELDSKLKQKEGGKVSNRLFYLSIPPDIFVDVVRCASGKASSKNGWTRVIVEKPFGRDAESSGELTRSLKQYLAEDQIFRYVL 299
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01929 299 Gene3D - 120 299 - -
Ccar2g01929 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 297 IPR036291 -
Ccar2g01929 299 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 121 296 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ccar2g01929 299 FunFam Glucose-6-phosphate 1-dehydrogenase 122 296 - -
Ccar2g01929 299 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 130 296 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01929 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:65849468 Ccar7g00040 Ccar-Chr7:262759 dispersed
Ccar Ccar-Chr2:65849468 Ccar5g01575 Ccar-Chr5:36872529 transposed