AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01938 ATGGCGGCAATACTGGCTTCTAACAGCTGCTATTGCCGTGATGTGCAATTGGTAAATCAAGGGAGAACAACGGACAATCTCAGCTTTTCAAGATCAATATCTACCCTGAAGTTGGATAGGCATGAATGTAAACCTAAAATTGAGAGGTTTCACAGGTTTCATGTTGAGATGCAACAGACAGAATCACCCATGAAATTTGGTAGCAATGGTCAACCTGCAAAACTGGATACAAATGGTCAACCTGTTAAGTTGGGTGCTAATGGTAAACCAGTGAATTTGGGTGCCAACGGTCAACCTGTAAAGTTGGGAAAGAATGGTCAAGCAATCACCATGGTTCCTACCAGTGAGGTGGTGAAAAACAAGCCTCTATCCAAACAAACAGCAGGGGTAGTGAATGGATCAACACAAGTTGTTAATGGAACAAGTCTTGTTAAGAGAACGACCACCCCAGCACCAGTTAAATCTGTAAAAGTCAGAGAACCCACTGGATTTCTGCCTTCTGAAGAATTGAAAGTCTTGCCATCAGATGAAAGTTTCAGCTGGGCAAATGAAAATTATAATTCAGTACAAAGATCAATAGATGTGTGGTCTTTTGTTCTTTCTCTTCGTGTTCGTGTCCTGTTCGACAATGCAAAGTGGGCATATCCTGGAGGCTTCACAGAGGACAAGCAGAAAAGCAGAAGAAGGAAAACAGCTGCATGGCTAAGAGAGTGTGTGCTTCAACTTGGCCCAACCTTTATCAAACTTGGGCAGTTATCTTCAACAAGGTCAGATCTATTTCCACGTGAATTTGTCGATGAGCTCGCCAAGTTACAGGACAGAGTACCGGCCTTTTCACCAGCAAAAGCCAAAAGTTTCATAGAGAAAGAATTGGGAGCTCCAGTTAATGTAATCTTCAAGGAGTTTGAAGAAAGACCAATTGCAGCTGCTAGTCTGGGTCAGGTACATCGTGCAATATTACATAATGGAGAAAAAGTAGTTATCAAAGTTCAAAGACCTGGTCTGAAGAAACTTTTTGACATTGATTTACGAAATTTGAAGTTAGTTGCGGAGTATTTTCAAAGAAGTGAATCTCTCGGTGGTCCGACAAGGGACTGGATAGGCATCTATGATGAATGTGCGAAGATTTTGTACGAGGAGATTGATTATATAAATGAAGGGAAAAATGCTGATAAATTTCGTCGAGATTTTCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACAGCACAGAAGGTGCTGACATTGGAGTATGTTCCAGGCATTAAGATTAATAACTTAGATGCGATAAAAGAAAGGGGTTTCAGTCGATCCCAAATCTCTTCACACGCCATTGAATCGTACTTGATTCAGGTTGAGAATCTTCCTCTTTATTCACCACCTCTTACATTTATTGAATGCAAAAGTTTCTTTCATGCCGACCCTCATCCTGGAAATCTTGCTATCGATGTGGATGAATCATTAATCTACTATGATTTTGGCATGATGGGGGAGATCAAGTCCTTCACAAGAGAAAGATTAATGGATCTTTTCTATGCAGTTTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTGATAAGTCTTGAAGCGCTTCAACCTACTGGAGACATGTCAGCAGTTAGGAGATCTGTTCAGTTCTTTTTGGATAATTTGCTAAGTCAGTCACCAGATCAGGAGACCACTTTGGCAGCAATAGGCGAGGTAAGCAGAATTGGCTATTTACTCGTTCCAGATTTTTCATTCGTCAAGATTGCTGCACCTTATGCACAGGAGCTGTTAGATCTTAAACAACAGCGGCGCAGTGGAACACAACTTGTCCAGGAAATACAAAAGCAAGCCAATGACTCTGAACGAGCAGCTCGGAAGGCCACAATATTGCAAATGGCAACCTTGTACACGGTTATTGGGGGTACGCTCGTAAACATAGGTGTCACATTTAGCAGCCAAGGCAGCCAACTTATAGCAAATGGATCGTTTGTTGCTGCAGGTGTATTTATAGCCCTGCTCCTTAGGTCCATGCAAAGGGTGAAGAAGCTTGACAAATTTGAAAAGATGATATAG 2076 41.38 MAAILASNSCYCRDVQLVNQGRTTDNLSFSRSISTLKLDRHECKPKIERFHRFHVEMQQTESPMKFGSNGQPAKLDTNGQPVKLGANGKPVNLGANGQPVKLGKNGQAITMVPTSEVVKNKPLSKQTAGVVNGSTQVVNGTSLVKRTTTPAPVKSVKVREPTGFLPSEELKVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLFDNAKWAYPGGFTEDKQKSRRRKTAAWLRECVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPAKAKSFIEKELGAPVNVIFKEFEERPIAAASLGQVHRAILHNGEKVVIKVQRPGLKKLFDIDLRNLKLVAEYFQRSESLGGPTRDWIGIYDECAKILYEEIDYINEGKNADKFRRDFRNIKWVRVPQVFWDYTAQKVLTLEYVPGIKINNLDAIKERGFSRSQISSHAIESYLIQVENLPLYSPPLTFIECKSFFHADPHPGNLAIDVDESLIYYDFGMMGEIKSFTRERLMDLFYAVYEKDAKKVMNSLISLEALQPTGDMSAVRRSVQFFLDNLLSQSPDQETTLAAIGEVSRIGYLLVPDFSFVKIAAPYAQELLDLKQQRRSGTQLVQEIQKQANDSERAARKATILQMATLYTVIGGTLVNIGVTFSSQGSQLIANGSFVAAGVFIALLLRSMQRVKKLDKFEKMI 691
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01938 691 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 125 635 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
Ccar2g01938 691 CDD ABC1-ADCK3-like 270 530 - -
Ccar2g01938 691 Pfam ABC1 atypical kinase-like domain 270 529 IPR004147 -
Ccar2g01938 691 SUPERFAMILY Protein kinase-like (PK-like) 272 528 IPR011009 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01938 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
38009 Ccar17g00306 Ccar2g01938
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr1:20514166 Ccar2g01938 Ccar-Chr2:65939818 dispersed
Ccar Ccar-Chr2:46623417 Ccar2g01938 Ccar-Chr2:65939818 dispersed
Ccar Ccar-Chr2:65939818 Ccar3g00739 Ccar-Chr3:9890903 dispersed
Ccar Ccar-Chr1:48885659 Ccar2g01938 Ccar-Chr2:65939818 transposed
Ccar Ccar-Chr17:3366846 Ccar2g01938 Ccar-Chr2:65939818 wgd