AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ccar2g01950 | ATGGGTTGTCAATGTGATCACTGCGGGGAGGCGAGGTCGATGGTCTATTGTCGATCGGATGCAGCCTACTTATGTTTGTCGTGTGATCGAATCGTCCATTCTGCGAATGCCCTATCGAAACGCCATTCAAGAACACTCGTTTGCGATAGGTGCAATTCACAACCCGCAGTGGTTAGATGCATCGAGGAAAAAGTATCTCTTTGTCAGAATTGCGATTGGGTTGGTCATAACGGTTCGTCTTTGGGTTCAACCACACACAGTCGGCAAACGTTGAATTGCTATTCGGGTTGTCCTTCGGCTGTAGAACTTTCTTCTATTTGGTCATTTATGGATTCTGCTTGTGAGCAAGGAATAGGTTCAATGAGTATTGCTGATAATAGCCAAGGACCTTCTAGAAACAACAATAATCAAGATTTACGCGAAGCAAATGGTATCGAAAGCGGAAATAACTCCAATATATCACAATCAGGGACAGAAGATCCTGAACCATTTGTTGATGATGGGTTCTATGCCGACTTTAACATGGACGAAGTTGACTTGAGCATCGAGAATTATGAAGAACTCTTTGGCGTAGGCCATAACGATCCCGAACATCTTTTTGCGAAGGATGGGATCGACAGTTTGTTCGGTGGTGCCGATTCAAATTGCCAGGGTCCATACGCAGCCAAGGAGTCTTCAACCGGACACGGAAATGCGGTGCAACCAGCATGCAGTAACGCAGCATCAGCTGATTCGTTAATGAGCTGCAAAACGGAACCAAACCCATGTTATGCAAGGCAACACTCAAATATCTCGTTCTCAAGCCTCACCGGGGAGAGCAGTGCCGGTGAATATCAAGACTGTGGAGCTTCTTCCATGCTTCTCATGGGAGAGCCGCCATGA | 882 | 46.37 | MGCQCDHCGEARSMVYCRSDAAYLCLSCDRIVHSANALSKRHSRTLVCDRCNSQPAVVRCIEEKVSLCQNCDWVGHNGSSLGSTTHSRQTLNCYSGCPSAVELSSIWSFMDSACEQGIGSMSIADNSQGPSRNNNNQDLREANGIESGNNSNISQSGTEDPEPFVDDGFYADFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDSLFGGADSNCQGPYAAKESSTGHGNAVQPACSNAASADSLMSCKTEPNPCYARQHSNISFSSLTGESSAGEYQDCGASSMLLMGEPP | 293 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ccar2g01950 | 293 | MobiDBLite | consensus disorder prediction | 121 | 159 | - | - | |
| Ccar2g01950 | 293 | SMART | bboxneu5 | 48 | 91 | IPR000315 | GO:0008270(InterPro) | |
| Ccar2g01950 | 293 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Ccar2g01950 | 293 | Pfam | ANCHR-like B-box zinc-binding domain | 47 | 85 | - | - | |
| Ccar2g01950 | 293 | CDD | Bbox1-BBX-like | 5 | 47 | IPR049808 | - | |
| Ccar2g01950 | 293 | ProSiteProfiles | Zinc finger B-box type profile. | 5 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Ccar2g01950 | 293 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 5 | 272 | - | - | |
| Ccar2g01950 | 293 | CDD | Bbox1-BBX-like | 47 | 91 | IPR049808 | - | |
| Ccar2g01950 | 293 | MobiDBLite | consensus disorder prediction | 121 | 169 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ccar2g01950 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 38004 | Ccar17g00293 | Ccar2g01950 | |
| 38860 | Ccar2g01950 | Ccar8g00878 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ccar | Ccar-Chr12:37899114 | Ccar2g01950 | Ccar-Chr2:66091843 | dispersed | |
| Ccar | Ccar-Chr13:5041250 | Ccar2g01950 | Ccar-Chr2:66091843 | dispersed | |
| Ccar | Ccar-Chr13:39452901 | Ccar2g01950 | Ccar-Chr2:66091843 | transposed | |
| Ccar | Ccar-Chr15:10711516 | Ccar2g01950 | Ccar-Chr2:66091843 | transposed | |
| Ccar | Ccar-Chr5:36988709 | Ccar2g01950 | Ccar-Chr2:66091843 | transposed | |
| Ccar | Ccar-Chr17:3224226 | Ccar2g01950 | Ccar-Chr2:66091843 | wgd | |
| Ccar | Ccar-Chr2:66091843 | Ccar8g00878 | Ccar-Chr8:22601299 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ccar11g00937 | ACH | 190 | 276 | C2C2-CO-like Transcription Factor family | AT2G24790 | 42.529 | 8.02e-12 | 63.5 | |
| Ccar11g00027 | ACH | 305 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 40.476 | 2.00e-11 | 63.2 | |
| Ccar16g00624 | . | 49 | 406 | C2C2-CO-like Transcription Factor family | AT5G24930 | 51.969 | 9.74e-100 | 300.0 | |
| Ccar7g00278 | . | 56 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 48.864 | 1.85e-93 | 281.0 | |
| Ccar8g00923 | . | 1 | 276 | C2C2-CO-like Transcription Factor family | AT1G78600 | 50.871 | 8.81e-84 | 250.0 | |
| Ccar8g00945 | . | 1 | 251 | C2C2-CO-like Transcription Factor family | AT1G75540 | 45.098 | 5.38e-61 | 194.0 | |
| Ccar8g00878 | ACH | 1 | 297 | C2C2-CO-like Transcription Factor family | AT3G07650 | 46.828 | 3.21e-86 | 261.0 | |
| Ccar9g00614 | . | 11 | 328 | C2C2-CO-like Transcription Factor family | AT2G47890 | 45.217 | 8.61e-89 | 268.0 | |
| Ccar9g00471 | . | 136 | 270 | C2C2-CO-like Transcription Factor family | AT2G24790 | 34.074 | 2.90e-11 | 60.5 | |
| Ccar15g00568 | . | 3 | 114 | C2C2-CO-like Transcription Factor family | AT4G27310 | 52.586 | 9.04e-33 | 117.0 | |
| Ccar12g01272 | . | 1 | 121 | C2C2-CO-like Transcription Factor family | AT3G21890 | 41.129 | 8.00e-24 | 87.0 | |
| Ccar4g00947 | . | 3 | 222 | C2C2-CO-like Transcription Factor family | AT3G21150 | 30.303 | 8.55e-23 | 91.3 | |
| Ccar10g00740 | ACH | 315 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 40.541 | 1.09e-11 | 64.3 | |
| Ccar10g00170 | . | 1 | 61 | C2C2-CO-like Transcription Factor family | AT1G78600 | 78.689 | 7.82e-28 | 102.0 | |
| Ccar17g00293 | ACH | 181 | 330 | C2C2-CO-like Transcription Factor family | AT5G48250 | 54.902 | 5.86e-39 | 133.0 | |
| Ccar17g00256 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 53.797 | 1.13e-97 | 288.0 | |
| Ccar17g00142 | . | 4 | 75 | C2C2-CO-like Transcription Factor family | AT5G54470 | 72.222 | 6.77e-32 | 116.0 | |
| Ccar5g01591 | . | 12 | 374 | C2C2-CO-like Transcription Factor family | AT2G33500 | 36.75 | 6.70e-56 | 196.0 | |
| Ccar13g01637 | . | 1 | 180 | C2C2-CO-like Transcription Factor family | AT4G38960 | 61.722 | 1.72e-83 | 245.0 | |
| Ccar13g01625 | . | 1 | 211 | C2C2-CO-like Transcription Factor family | AT4G27310 | 37.5 | 2.56e-34 | 121.0 | |
| Ccar13g01119 | . | 258 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 44.595 | 1.21e-12 | 65.5 | |
| Ccar13g00399 | . | 10 | 280 | C2C2-CO-like Transcription Factor family | AT1G68190 | 39.809 | 6.31e-64 | 206.0 | |
| Ccar3g01109 | . | 1 | 331 | C2C2-CO-like Transcription Factor family | AT1G75540 | 46.243 | 6.93e-78 | 239.0 | |
| Ccar1g02159 | ACH | 279 | 329 | C2C2-CO-like Transcription Factor family | AT5G57660 | 50.98 | 7.26e-11 | 61.2 | |
| Ccar1g01246 | . | 9 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 53.351 | 7.97e-126 | 364.0 | |
| Ccar1g00021 | ACH | 312 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 41.558 | 7.60e-10 | 57.4 | |
| Ccar2g02011 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 47.896 | 1.30e-84 | 254.0 | |
| Ccar2g01950 | ACH | 1 | 296 | C2C2-CO-like Transcription Factor family | AT5G48250 | 53.548 | 1.28e-99 | 295.0 | |
| Ccar2g00780 | . | 9 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 44.414 | 6.02e-86 | 263.0 |