AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ccar2g01973 | ATGATGCTTCGAGTTATGAAGAAGCTGCCTTTTAATGGCCATCGATGGATGAGCAACACCGTAATGAGTTTCGGAGACGGTACCCATGGTGCACTTGGCTTACCAACGTCCATCACCGGCATCGATCCCCACGCCTATGAACCAACTCCAATCTCCGCCTTACCTCCCGATGTTTCCAGCATTGCCGCCGGTCACCACCACTCTCTCGCTGTAACTTCTCAAGGCCACCTCTGGTCTTGGGGCCGTAATGTTGAATCCCAACTTGGACGTGGCCTTCATTCCCCTAGAGAAACATGGTTCGAACCACGAAGAATAGATGGGTTGATTGGTGTTCAATCTGCATTTGCATCAGGTGCTGTTTCTGCAGCCATTGGGGTTGATGGGGCCTTATGGGTTTGGGGGAAATCGAATCGTGGTCAATTGGGTCTTGGAGAAGGGATCACAGAGGCTGTTCTTCCTTCCAGGATAAAAGTTCTTGCTAAAGAAGAAATAATTAAGGTTTCATTTGGACGGGGACATGCTCTTGCACTTGCTAAAAATGGAAAGTTGTTTGGTTGGGGTTATTCAGCAGATGGTAGATTAGGAAAGAGAGGAGTTGGGGGGGCTTCACCACACAATTCAAGGGCTAATTTGTCTTCAAGTTTTGACCTTGAAGCTGCTGAGAAAGTAGTCTTGGAAACCATGGATAAGGAGAAGGATATGCCTATAATCTGGGAGCCATGTTTGATTGATGAGCTAGAAGGTGTTGAAGTTGCCGACATCTCATGTGGGTTTGACCACGCCTTGGTTCTTCTACGTGATGGAACCTTACTCAGTGGTGGAAACAATTTATATGGGCAATTGGGTAGATCAACTCAAGATTTGGAATTGCTTCCAGTTGACATAAGTGCTCACGCTGTTTCTATTGCTTCAGGGCTAGGCCATTCTTTGGCAATATGCCAGATCCCATCTGCAGATGGTGGTAGAGGCATCTCCGGCATCTTTTCATGGGGTTGGAGTCGGGATTCTCAGCTCGGGAGGGAAGGTCCAGCAAACATCCCACTCCTGGTGGATGGACTTTTAGGAGAAAATCTGTTATCAGTATCAGGCGGGCGTGTCCACTCTATTGCTCTCACTTCCGATGGAGAGGTCTTTGCTTGGGGGTGTGGCAGAAATGGGAGGCTCGGTTTGGGCAGTTCTATGGACGAACCCGAACCCATGTTGGTTGAGCTTTCAGAAGGTACTAAAGCTTTGCAAGCTGTCTCAGGCTTCGATCATAATCTGGTCCTGACTGGCTAA | 1278 | 48.28 | MMLRVMKKLPFNGHRWMSNTVMSFGDGTHGALGLPTSITGIDPHAYEPTPISALPPDVSSIAAGHHHSLAVTSQGHLWSWGRNVESQLGRGLHSPRETWFEPRRIDGLIGVQSAFASGAVSAAIGVDGALWVWGKSNRGQLGLGEGITEAVLPSRIKVLAKEEIIKVSFGRGHALALAKNGKLFGWGYSADGRLGKRGVGGASPHNSRANLSSSFDLEAAEKVVLETMDKEKDMPIIWEPCLIDELEGVEVADISCGFDHALVLLRDGTLLSGGNNLYGQLGRSTQDLELLPVDISAHAVSIASGLGHSLAICQIPSADGGRGISGIFSWGWSRDSQLGREGPANIPLLVDGLLGENLLSVSGGRVHSIALTSDGEVFAWGCGRNGRLGLGSSMDEPEPMLVELSEGTKALQAVSGFDHNLVLTG | 425 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 375 | 425 | IPR000408 | - | |
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 325 | 374 | IPR000408 | - | |
| Ccar2g01973 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 58 | 87 | - | - | |
| Ccar2g01973 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 251 | 280 | - | - | |
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 128 | 180 | IPR000408 | - | |
| Ccar2g01973 | 425 | SUPERFAMILY | RCC1-BLIP-II | 19 | 424 | IPR009091 | - | |
| Ccar2g01973 | 425 | Gene3D | - | 222 | 425 | IPR009091 | - | |
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 181 | 267 | IPR000408 | - | |
| Ccar2g01973 | 425 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 254 | 264 | IPR000408 | - | |
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 19 | 74 | IPR000408 | - | |
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 75 | 127 | IPR000408 | - | |
| Ccar2g01973 | 425 | Gene3D | - | 14 | 221 | IPR009091 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 167 | 183 | IPR000408 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 370 | 391 | IPR000408 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 183 | 197 | IPR000408 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 128 | 144 | IPR000408 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 58 | 71 | IPR000408 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 20 | 36 | IPR000408 | - | |
| Ccar2g01973 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 77 | 93 | IPR000408 | - | |
| Ccar2g01973 | 425 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 20 | 91 | IPR051210 | - | |
| Ccar2g01973 | 425 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 61 | 71 | IPR000408 | - | |
| Ccar2g01973 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 315 | IPR000408 | - | |
| Ccar2g01973 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 374 | 423 | IPR000408 | - | |
| Ccar2g01973 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 327 | 371 | IPR000408 | - | |
| Ccar2g01973 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 127 | 177 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ccar2g01973 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 38002 | Ccar17g00282 | Ccar2g01973 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ccar | Ccar-Chr1:8714458 | Ccar2g01973 | Ccar-Chr2:66493014 | dispersed | |
| Ccar | Ccar-Chr2:66493014 | Ccar5g00976 | Ccar-Chr5:26290572 | dispersed | |
| Ccar | Ccar-Chr10:19973661 | Ccar2g01973 | Ccar-Chr2:66493014 | transposed | |
| Ccar | Ccar-Chr11:8029864 | Ccar2g01973 | Ccar-Chr2:66493014 | transposed | |
| Ccar | Ccar-Chr1:3974411 | Ccar2g01973 | Ccar-Chr2:66493014 | transposed | |
| Ccar | Ccar-Chr1:15794961 | Ccar2g01973 | Ccar-Chr2:66493014 | transposed | |
| Ccar | Ccar-Chr4:13443994 | Ccar2g01973 | Ccar-Chr2:66493014 | transposed | |
| Ccar | Ccar-Chr17:3120531 | Ccar2g01973 | Ccar-Chr2:66493014 | wgd |