AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01985 ATGGCAGCTGCTTCTTCTTCTACTTCTACTTGGAATAACCCTAGGACCAGATTCTTGTCTTCTTCCAAACAAGTCTTTGCTAAGTCCTCTTCCAATTCAATCTCTTTCTCTAACAAACCCATTGCTCCTATTTCACAGAATCCCATTCGTTCTGCACTTCAAACGCCGTCGATTCTTCAGTTACCGAAACAGTCCATCGGAAAAGCTTCCACCGGTGCTATTCAAATGCCTTCTTCTCCGGCGGTCCAACAAAATTGGAACTTGTTACAGAAAGTTGCAGCAATGGCATTGGACGCCGTGGAAAATGGGTTGATAGCACGAGAAAAGCAACATCCTTTGCCGAAAACGGCGGACCCAAATGTTCAAATCGCCGGAAACTTTTCTCCTGTACCGGAGCAACCGGTGCGTCACTGTTTACCGGTGGTCGGTAAAATTCCGGAAAGTATTCAAGGAGTTTACTTGAGAAATGGAGCTAACCCATTGTTTGAGCCTACCTCCGGCCACCATTTGTTCGATGGAGACGGCATGATTTACGCCGTCAAATTCGATAACGGTTCAGCTAGCTACGCTTGCCGGTTCACTGAGACGCAGAGGCTTGTTCAAGAACGTGCTCTTGGTAAACCGGTTTTTCCGAAAGCAATCGGTGAACTCCATGGCCATTCCGGCATAGCCAAGCTGCTACTCTTTTATGCTCGTGGCTTATGTGGCTTAGTTGACCATAGTCAAGGCATTGGTGTGGCTAACGCCGGCTTAGTTTACTTTAACAACCGGCTATTAGCGATGTCAGAAGATGATTTGCCTTATCACGTGAGTGTCACACCTTCCGGCGACTTGAAAACAGCCGGACGTTACAATTTTGACGACCAATTGGACTCCACGATGATCGCACACCCAAAACTTGACCCAGTTTCCGGCGAGCTTTTTGCATTGAGCTATGACGTCATCCAGAAGCCGTATCTGAAATATTTCTGGTTTTCACCTGACGGCAAGAAATCAAACGACGTGGCGATTGATTTGGGAAAGCCGACTATGGTTCATGATTTCGCGATCACGGAGAATTTCGTGGTGGTGCCAGACCACCAGGTGGTTTTCAAGATGTCGGAAATGATCACCGGTGGGTCGCCGGTGGTGTATGACAAAGAGAAAGTGTCACGTTTCGGTGTGCTCGATAAATACGCAGCTGACGGGTCGGGTATCAAATGGGTCGAAGTACCAGATTGTTTCTGCTTTCATCTCTGGAACGCCTGGGAAGAACCCGAATCCGACGAGGTCGTCGTGATAGGATCCTGCATGACTCCGGCGGACTCCATTTTCAACGAATGTRAYGAAGAAYTMAAAAGCGTYTTATCRGAAATCCGWYTKAATYTMAMGACCGGARAATCCASTCGYCGRSMSATAATCTCACCKGAAAAYGAYGTMAATTTRGAAGCAGGRATGGTGAACAARAACCTCCTCGGCCGGAAATCCAAATACGCCTACCTCGCCATCGCCGAGCCGTGGCCAAAGGTTTCCGGTTTCGCCAAAGTCGATCTTGCCACCGGCGACACCAATAAATTCTTTTACGGCGACGAAAAATACGGCGGCGAGCCTCTCTTTCTTCCGAGCAACCCCAACTCCGACGCCGAAGACGACGGCCACATCTTGGCCTTCGTTCACGACGAGAAAACATGGGAATCGGAGCTTCAAATCGTGAATGCAATGACGATGGAATTAGAAGCGACGGTGAAGCTGCCTTCGAGGGTTCCATACGGGTTTCACGGAACCTTCATAACCGCCAAAGATTTGGCAACGCAAGCATAA 1800 48.65 MAAASSSTSTWNNPRTRFLSSSKQVFAKSSSNSISFSNKPIAPISQNPIRSALQTPSILQLPKQSIGKASTGAIQMPSSPAVQQNWNLLQKVAAMALDAVENGLIAREKQHPLPKTADPNVQIAGNFSPVPEQPVRHCLPVVGKIPESIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKFDNGSASYACRFTETQRLVQERALGKPVFPKAIGELHGHSGIAKLLLFYARGLCGLVDHSQGIGVANAGLVYFNNRLLAMSEDDLPYHVSVTPSGDLKTAGRYNFDDQLDSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFWFSPDGKKSNDVAIDLGKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAADGSGIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECBEEXKSVLSEIRXNXXTGXSXRRXIISPENDVNLEAGMVNKNLLGRKSKYAYLAIAEPWPKVSGFAKVDLATGDTNKFFYGDEKYGGEPLFLPSNPNSDAEDDGHILAFVHDEKTWESELQIVNAMTMELEATVKLPSRVPYGFHGTFITAKDLATQA 599
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01985 599 Pfam Retinal pigment epithelial membrane protein 130 590 IPR004294 GO:0016702(InterPro)
Ccar2g01985 599 PANTHER BETA-CAROTENE DIOXYGENASE 108 590 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01985 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
37997 Ccar17g00273 Ccar2g01985
38865 Ccar2g01985 Ccar8g00866
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:66634996 Ccar8g00658 Ccar-Chr8:19400603 dispersed
Ccar Ccar-Chr17:3029813 Ccar2g01985 Ccar-Chr2:66634996 wgd
Ccar Ccar-Chr2:66634996 Ccar8g00866 Ccar-Chr8:22432112 wgd