AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g01989 ATCATAGAACTGCAAGTACATGTAGATTGTGCCGGCTGTGAGAACAAGATCCGAAAATCTCTTCAAAAACTCAAAGGGGTGGAGAACGTAGAAATAGACATGGGGTTACAGAAGGTGACGGTGACGGGATATGCCGACGAGAAAAAGGTGTTGAAGACAGTGAGAAAAACCGGCCGGCGAGCTGAGATCTGGAACGTACCCTACAATCCCGACATCCGCAGCCATAATTACAACGTTAATCAGTATGCTCAACAACAACAACAACAACAGAATGGTAATGGTGGTTCCGGCACCGGTGGCCCCACAGCGACGTTCTATACACGGCAGCCATCTTCGTCGTCATCGTACAACTACTACAAGCATGGTTACGATAACCACCAGAGTTATAACCCGATCCAGTCTTCCGGTTTAATTGGACACCAGACCGGTGCTGCCTTTAGTGATGAAAATACCAATGCTGCCTGTAACATCATGTAG 477 47.38 IIELQVHVDCAGCENKIRKSLQKLKGVENVEIDMGLQKVTVTGYADEKKVLKTVRKTGRRAEIWNVPYNPDIRSHNYNVNQYAQQQQQQQNGNGGSGTGGPTATFYTRQPSSSSSYNYYKHGYDNHQSYNPIQSSGLIGHQTGAAFSDENTNAACNIM 158
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g01989 158 Pfam Heavy-metal-associated domain 6 59 IPR006121 GO:0046872(InterPro)
Ccar2g01989 158 CDD HMA 3 62 IPR006121 GO:0046872(InterPro)
Ccar2g01989 158 SUPERFAMILY HMA, heavy metal-associated domain 5 65 IPR036163 GO:0046872(InterPro)
Ccar2g01989 158 ProSiteProfiles Heavy-metal-associated domain profile. 1 62 IPR006121 GO:0046872(InterPro)
Ccar2g01989 158 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 158 IPR045181 GO:0046872(InterPro)
Ccar2g01989 158 MobiDBLite consensus disorder prediction 83 111 - -
Ccar2g01989 158 Gene3D - 1 63 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g01989 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr12:30915863 Ccar2g01989 Ccar-Chr2:66707125 dispersed
Ccar Ccar-Chr15:18828632 Ccar2g01989 Ccar-Chr2:66707125 dispersed
Ccar Ccar-Chr2:66707125 Ccar13g01071 Ccar-Chr13:15618576 dispersed
Ccar Ccar-Chr2:66707125 Ccar13g00373 Ccar-Chr13:4649846 transposed