AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02000 ATGCAGCAAGATCGGAGAAGAAAGAGTTCAAAAGATGTAGAGTTTTTCACTGAATACGGTGAATCAAATCGATACAAAATCTTGGAGATAATAGGAAAGGGAAGTTATGGAGTCGTTTGTGCAGCCGTTGACACACAGACTGGGGACAAGGTTGCAATAAAGAAAATAACCAACATTTTTGAACATTCATCTGATGCTATTCGGATTTTGCGTGAGATTAAGTTGCTTAGGCTTCTACGTCATCCTGATATTGTTGAAATTAAGCGGATCATGTTGCCACCATCAAGACGCGACTTCAAAGATATTTATGTGGTATTTGAACTAATGGAATCTGATCTTCATCAAGTTATAAAAGCCAATGATGACTTGACGCATGAGCACCATCGGTTTTTCCTCTATCAAATGCTACGAGCTTTGAAATATATGCATACAGCAAACGTGTACCATCGAGATCTCAAGCCAAAGAACATATTAGCAAATGCAAATTGCAAACTCAAGATATGCGATTTTGGACTAGCAAGGGCTGCATTTACTGATACCCCAACCACAATATTTTGGACGGATTATGTTGCAACAAGATGGTATAGAGCTCCTGAGCTATGCGGATCTTTTTACTCAAAGTATACCCCTGCTGTTGATATTTGGGGCATTGGATGTATATTTGCTGAAGTATTGACAGGAAAGCCACTCTTTCCTGGCAAGAGCGTTGTCCACCAGTTGGAGCTTATCACTGATCTTCTTGGGACACCATCATCAGATACCATTTCTAGAGTTCGTAATGACAAGGCAAGAAAATACTTAACGGATATGCGAAGAAAGAAGCCTGTGACGTTTTCAGAGAAATTTCTAGATGTCGACCCCCTGGCACTTAGGCTATTGCAAAGGTTGTTAGCGTTTGATCCAAAGGATCGACCAACTGCAGAACAAGCACTAGCTGATCCATACTTCAAGGGACTTTCCAAAGTTGAGAGGGAGCCTTCTTGTCAGTCATTTTCAAAGTTGGAGTTTGAGTTTGAGAGGCGCAGGGTAACAAAGGAGGACATTAGGGAATTAATATTCCGGGAGGTTCTGGAATACCACCCTCAGCTGCTGAAAGATTACATGGCTGGGAATGATCACTCCAATTTTCTTTATCCTAGGTGTACAGTTTCTTCTTTGAGTATGATTGGTGGTCCTCCGAAGCTGCAGCAGTGTTTGGCTGCATTTGAGAATAGACCAATGGTAGAAAACGTGTCTTGTAATGCAAGCGGAAACATTTTTAACGCTGCCGCTGCCCGGCCACCCCCCAGGATGCCCAAAGGAAGGGTCGTTGGGCCAGTTCTTCCGTTTGAGGGTAGCCGAGAAATGAAAGATCCTCGGGTAATGGTTAGAAATGGTGGTGGATATGCATATAGGAGCAATAGCGGAAAGATTGAAGCAGATGATAGGGATTCTTATTCCTTGATCAAACAGCAAACAACGGCAACGGCAACGGCTAAAGGGTTGATCAACAGTAACCCGTATTACAACCAAGGTCATGGGCATGGTCAACAGGCAAACGAAAGGATAGCAATGGATCCGAAGTTTATGCAGGTGGCACAGCCACAATATGGCGTGGCGGGAGCGGCAGCAGTTGCTGTTGCCGCCCATAGAGAGGTTGGTGTTGTTCAGATATCGTAG 1659 43.58 MQQDRRRKSSKDVEFFTEYGESNRYKILEIIGKGSYGVVCAAVDTQTGDKVAIKKITNIFEHSSDAIRILREIKLLRLLRHPDIVEIKRIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARAAFTDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAVDIWGIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSSDTISRVRNDKARKYLTDMRRKKPVTFSEKFLDVDPLALRLLQRLLAFDPKDRPTAEQALADPYFKGLSKVEREPSCQSFSKLEFEFERRRVTKEDIRELIFREVLEYHPQLLKDYMAGNDHSNFLYPRCTVSSLSMIGGPPKLQQCLAAFENRPMVENVSCNASGNIFNAAAARPPPRMPKGRVVGPVLPFEGSREMKDPRVMVRNGGGYAYRSNSGKIEADDRDSYSLIKQQTTATATAKGLINSNPYYNQGHGHGQQANERIAMDPKFMQVAQPQYGVAGAAAVAVAAHREVGVVQIS 552
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02000 552 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Ccar2g02000 552 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Ccar2g02000 552 SMART serkin-6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Ccar2g02000 552 FunFam Mitogen-activated protein kinase 14 119 - -
Ccar2g02000 552 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Ccar2g02000 552 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Ccar2g02000 552 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Ccar2g02000 552 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Ccar2g02000 552 FunFam Mitogen-activated protein kinase 111 339 - -
Ccar2g02000 552 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Ccar2g02000 552 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Ccar2g02000 552 CDD STKc-TDY-MAPK 24 361 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02000 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr17:26545498 Ccar2g02000 Ccar-Chr2:66881422 dispersed
Ccar Ccar-Chr1:45172192 Ccar2g02000 Ccar-Chr2:66881422 dispersed
Ccar Ccar-Chr2:66881422 Ccar5g01149 Ccar-Chr5:30406789 dispersed
Ccar Ccar-Chr13:16829685 Ccar2g02000 Ccar-Chr2:66881422 transposed
Ccar Ccar-Chr15:6680670 Ccar2g02000 Ccar-Chr2:66881422 transposed
Ccar Ccar-Chr17:2844905 Ccar2g02000 Ccar-Chr2:66881422 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00554 . 4 367 MAP Kinase gene family AT4G01370 82.967 0.0 626.0
Ccar14g00497 ACH 81 350 MAP Kinase gene family AT3G59790 29.779 4.43e-30 117.0
Ccar14g00165 . 104 326 MAP Kinase gene family AT1G18150 37.86 5.29e-43 155.0
Ccar16g00879 . 56 335 MAP Kinase gene family AT4G01370 82.857 2.60e-169 478.0
Ccar16g00835 ACH 117 334 MAP Kinase gene family AT1G18150 34.545 4.32e-29 115.0
Ccar7g00092 . 104 309 MAP Kinase gene family AT1G18150 36.321 2.95e-35 131.0
Ccar9g00489 . 3 97 MAP Kinase gene family AT3G45640 80.0 3.41e-51 167.0
Ccar9g00479 . 17 376 MAP Kinase gene family AT4G01370 72.222 0.0 540.0
Ccar15g00265 . 79 490 MAP Kinase gene family AT1G73670 73.023 0.0 654.0
Ccar12g01113 . 144 254 MAP Kinase gene family AT3G45640 40.179 2.13e-18 79.3
Ccar12g00523 . 100 206 MAP Kinase gene family AT2G18170 32.031 1.31e-08 55.5
Ccar4g00398 . 1 363 MAP Kinase gene family AT2G18170 80.165 0.0 637.0
Ccar6g00401 . 1 217 MAP Kinase gene family AT1G59580 73.272 1.97e-113 328.0
Ccar10g00709 . 10 395 MAP Kinase gene family AT2G43790 77.427 0.0 654.0
Ccar17g00826 . 9 195 MAP Kinase gene family AT5G19010 70.673 4.97e-90 273.0
Ccar17g00827 . 1 567 MAP Kinase gene family AT5G19010 77.604 0.0 917.0
Ccar17g00261 . 1 538 MAP Kinase gene family AT3G14720 65.523 0.0 723.0
Ccar5g01532 . 106 336 MAP Kinase gene family AT3G59790 26.471 2.13e-23 97.1
Ccar5g01149 . 1 363 MAP Kinase gene family AT2G18170 82.92 0.0 644.0
Ccar5g00965 . 90 409 MAP Kinase gene family AT1G73670 28.793 8.09e-23 98.6
Ccar13g01121 . 1 508 MAP Kinase gene family AT3G18040 77.091 0.0 816.0
Ccar13g00697 ACH 20 226 MAP Kinase gene family AT3G18040 33.184 7.21e-23 102.0
Ccar3g01095 . 1 363 MAP Kinase gene family AT1G10210 85.124 0.0 662.0
Ccar3g00199 ACH 24 311 MAP Kinase gene family AT5G19010 29.393 2.12e-26 114.0
Ccar3g00085 . 22 255 MAP Kinase gene family AT3G18040 33.469 1.52e-29 122.0
Ccar1g02341 . 78 562 MAP Kinase gene family AT1G73670 68.994 0.0 674.0
Ccar1g02202 . 173 248 MAP Kinase gene family AT2G43790 89.474 3.98e-46 151.0
Ccar1g02134 . 166 285 MAP Kinase gene family AT3G59790 38.281 3.68e-21 88.2
Ccar1g01044 . 44 349 MAP Kinase gene family AT3G45640 32.484 1.95e-48 166.0
Ccar1g00269 . 22 311 MAP Kinase gene family AT5G19010 31.23 9.42e-34 134.0
Ccar2g02000 . 1 612 MAP Kinase gene family AT1G53510 61.011 0.0 686.0
Ccar2g01154 . 203 279 MAP Kinase gene family AT2G43790 44.156 1.52e-14 66.2
Ccar2g00545 . 9 376 MAP Kinase gene family AT4G01370 72.423 0.0 583.0
Ccar2g00542 . 3 370 MAP Kinase gene family AT3G45640 72.554 0.0 543.0
Ccar2g00015 . 104 307 MAP Kinase gene family AT1G18150 39.524 1.09e-37 143.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar Pkinase 3.1e-68 CL0016 PK CMGC_MAPK