AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02002 ATGGCTTCCCATTCTTTCACACCCAGCAATTTAAGTCTCCGCCTTCACTATTCCACCAAACCCACATTCAATTCGGGTCTCATATCATCAAATCGGTTTCTATTAACGATACCCACAACCCGATTTTCTCCATCAATTCGCTCCATGGGTTCTTCGTCTTCTTCATCGCAGAAACCAGACGCCACAGCTCAAGATTCGATGTTTGATCAATTTGCAGAAGCGGGGAAGATGGATTATAAATCTGTTAGTGATCAAGAATGGAAGAAGAAACTCACTGGGGATCAGTTTTATGTAACTCGACAAAAAGGAACAGAAAGGGCATTCACTGGGGAATACTGGAACACGAAAACCAAGGGAACGTACCATTGCATTTGTTGCGATACTCCACTGTTCGAGTCGTCCACAAAGTTCGATAGCGGAACTGGTTGGCCATCGTACTATGAGCCAATAGGAAGTAACGTGAAGTCGAAGCTAGACCTATCGATCATCTTCATGCCTCGACAGGAAGTTGTGTGTGCAGTTTGTGATGCTCATCTTGGTCATGTCTTTGATGATGGTCCTCCACCCACCGGGAAACGTTATTGCATCAATAGTGTTTCCCTGAAGATGAAGGCCAACTAG 621 44.77 MASHSFTPSNLSLRLHYSTKPTFNSGLISSNRFLLTIPTTRFSPSIRSMGSSSSSSQKPDATAQDSMFDQFAEAGKMDYKSVSDQEWKKKLTGDQFYVTRQKGTERAFTGEYWNTKTKGTYHCICCDTPLFESSTKFDSGTGWPSYYEPIGSNVKSKLDLSIIFMPRQEVVCAVCDAHLGHVFDDGPPPTGKRYCINSVSLKMKAN 206
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02002 206 Pfam SelR domain 86 204 IPR002579 GO:0033743(InterPro)
Ccar2g02002 206 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 84 206 IPR002579 GO:0033743(InterPro)
Ccar2g02002 206 MobiDBLite consensus disorder prediction 45 64 - -
Ccar2g02002 206 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 82 203 IPR002579 GO:0033743(InterPro)
Ccar2g02002 206 FunFam Peptide methionine sulfoxide reductase MsrB 76 206 - -
Ccar2g02002 206 Gene3D Peptide methionine sulfoxide reductase. 74 206 - -
Ccar2g02002 206 PANTHER METHIONINE SULFOXIDE REDUCTASE 46 204 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Ccar2g02002 206 SUPERFAMILY Mss4-like 82 204 IPR011057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02002 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:62070577 Ccar2g02002 Ccar-Chr2:66910828 dispersed