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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02020 ATGACGTCAGGGACGAGGATGCCTACATGGAAGGAGAGAGAGAATAACAAGAGGAGAGAGAGGAGGAGGAGAGCCATCGCCGCGAAGATATTCACCGGTCTGAGGATGTACGGCAACTACAAGCTGCCTAAGCATTGTGATAACAACGAGGTCCTCAAAGCCCTCGCCGATGAGGCTGGCTGGACCGTCGAACCGGACGGCACCACCTATCGTAAGGGATGCAAGCCTGTGGAACGGATGGAAGTTGGTGGATCTGCATCAGCAAGCCCATGCTCATCATCTTACCACCCAAGTCCCTATGCTTCCTATCACCCCAGCCCTCCCTGCTCTTCCATCGCGAGCCCATCCTCCTCTTATGCACCCAACGCTCACCCCGATTCACTCATTCCATGGCTCAAGAATCTTTCCTCTTCATCCTCCTCATCAAACTCAGCCAAGCTTCCCCATCTTTACATCCACACTACTGGCTCCATTAGTGCACCCGTGACTCCACCCATGAGTTCTCCAACTGCTCGATCCCCTCCACGACTCAAAACCGATACCACCTGGGGTGCAGGTGCACATGCACGTGCACCTCGTCACTTCTCCTATCTTCCCTCTTCGACTCCACCAAGTCCTGGTTGCCACACCCTCCCTAATTCCGAATGGTTCTCTGGCATTCGGCCCACGTCCCCAACTTTCAGCCTCGTGGCATCAAACCCGTTTGGATTCTTCAAGGAAGCGGCTATATCGCATGGTGGATCACGAATGTGGACTCCTGGACAAAGTGGGACTTGCTCTCCTGCAATTCCTCCAGGATTTGACAACACTGCCGACATTCCAATGGCGGAATTAGTTTCCGATGAATTTGCGTTCGGTAGCAATGCAGGAGGGAGGGTGAAGCCATGGGAAGGAGAGAGGATCCACGAGGTAAAATGCAAATTGGAGAAGAAATAG 936 53.31 MTSGTRMPTWKERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALADEAGWTVEPDGTTYRKGCKPVERMEVGGSASASPCSSSYHPSPYASYHPSPPCSSIASPSSSYAPNAHPDSLIPWLKNLSSSSSSSNSAKLPHLYIHTTGSISAPVTPPMSSPTARSPPRLKTDTTWGAGAHARAPRHFSYLPSSTPPSPGCHTLPNSEWFSGIRPTSPTFSLVASNPFGFFKEAAISHGGSRMWTPGQSGTCSPAIPPGFDNTADIPMAELVSDEFAFGSNAGGRVKPWEGERIHEVKCKLEKK 311
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02020 311 MobiDBLite consensus disorder prediction 1 22 - -
Ccar2g02020 311 Pfam BES1-BZR1 plant transcription factor, N-terminal 4 135 IPR008540 -
Ccar2g02020 311 PANTHER BES1-BZR1 HOMOLOG PROTEIN 3-RELATED 1 305 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02020 K14503 brassinosteroid resistant 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
37986 Ccar17g00250 Ccar2g02020
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr12:30623273 Ccar2g02020 Ccar-Chr2:67276811 dispersed
Ccar Ccar-Chr2:67276811 Ccar5g01201 Ccar-Chr5:31245051 dispersed
Ccar Ccar-Chr15:20328846 Ccar2g02020 Ccar-Chr2:67276811 transposed
Ccar Ccar-Chr14:3108784 Ccar2g02020 Ccar-Chr2:67276811 wgd
Ccar Ccar-Chr17:2754481 Ccar2g02020 Ccar-Chr2:67276811 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00288 . 22 315 BZR Transcription Factor family AT1G75080 45.752 1.66e-45 160.0
Ccar14g00182 . 1 325 BZR Transcription Factor family AT1G78700 66.866 3.03e-121 349.0
Ccar11g00728 . 234 335 BZR Transcription Factor family AT1G75080 44.118 3.02e-16 69.7
Ccar12g01094 . 1 325 BZR Transcription Factor family AT1G78700 57.647 2.78e-86 259.0
Ccar4g00456 ACH 22 335 BZR Transcription Factor family AT1G75080 53.628 2.38e-79 242.0
Ccar6g00203 ACH 71 189 BZR Transcription Factor family AT1G75080 55.372 9.22e-25 97.4
Ccar17g00250 ACH 3 309 BZR Transcription Factor family AT1G78700 64.516 8.22e-95 280.0
Ccar5g01201 . 22 333 BZR Transcription Factor family AT1G19350 60.828 5.02e-107 313.0
Ccar3g01447 . 51 272 BZR Transcription Factor family AT3G50750 34.728 1.30e-24 97.8
Ccar3g01059 ACH 22 335 BZR Transcription Factor family AT1G75080 58.255 1.96e-96 286.0
Ccar1g01352 . 23 333 BZR Transcription Factor family AT1G75080 60.772 5.53e-106 310.0
Ccar2g02020 ACH 1 308 BZR Transcription Factor family AT1G78700 68.025 1.19e-109 320.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar BES1_N 8e-60 No_clan TF BES1