AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02021 ATGTGGAACTACATATGGATTCTTTTTTTGATTTATCTTCTGATAGAAATCAGCTTTGCTAAGGCTGCTTCTGTTGATGATGGATTGACTTCCACGTGTCCTGCGCTTGACCCCAGGCTGAATTACCGTCCGATAATCGGAATTCTCAGCCATCCAGGAGATGGTGCCTCCGGTCAACTTAGTAATGCGACTGATGCTTCGTATATTGCTGCATCGTATGTGAAGTTTGTTGAATCTGCCGGTGCTAGGGTTATTCCTCTCATCTATAACGAACCTCCTGAGGTTCTCCAGAGTAAACTCAATCTGGTCAATGGAGTGCTTTTTACCGGTGGATGGTCTAAGGCTGGCCTATACTTTGATGTTGTTGAGGGAATTTTTAATCAAGTCCTGAAGAAGAATGATGCAGGTGACCATTTCCCATTGCTTGCAATATGCTTAGGTTTTGAACTCCTAACGATGGTTATTAGCAAAAACAATAATATCCTTGAAGCCTTCAGTGCATCAAATCAAGCGTCTACGCTCCAATTCATGAAGAATGTAAATATTGAAGGAACTCTGTTTCAAAGATTTGCTCCTGAGCTGATTGCGAAGTTGAGCACAGAATGCCTTGTGATGCAAAACCATAAATTTGGCATATCGCCAGAAACATTTCAAGGGAACATGGAACTGTGCAGCTTCTTCAAGATCTTAACAACTAGTAGGGATGAAAATAACAAGGTATATGTATCAACAGTTCAATCAGAAAGCTATCCAGTAACTGCTGTCCAGTGGCACCCAGAGAAAAATGCTTTTGAGTGGGGATTGTCGATGATTCCACATTCAGATGATGCAATTCAAGTGACTCAACACGTTGCCAACTTTTTCGTAAGTGAGGCTAGAAAATCCTTCAACAACCCCCCTGCTAAGGAAGTGCTGGACAACGTTATTTACAATTACAGCCCCACTTATCGTGGGAAGGAGGGGAAGGGATATGACGAGGTTTACATCTTCACCGAAAAGGCTGCTCCATTTCATTATAAAATGTGA 1026 42.01 MWNYIWILFLIYLLIEISFAKAASVDDGLTSTCPALDPRLNYRPIIGILSHPGDGASGQLSNATDASYIAASYVKFVESAGARVIPLIYNEPPEVLQSKLNLVNGVLFTGGWSKAGLYFDVVEGIFNQVLKKNDAGDHFPLLAICLGFELLTMVISKNNNILEAFSASNQASTLQFMKNVNIEGTLFQRFAPELIAKLSTECLVMQNHKFGISPETFQGNMELCSFFKILTTSRDENNKVYVSTVQSESYPVTAVQWHPEKNAFEWGLSMIPHSDDAIQVTQHVANFFVSEARKSFNNPPAKEVLDNVIYNYSPTYRGKEGKGYDEVYIFTEKAAPFHYKM 341
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02021 341 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 59 277 - -
Ccar2g02021 341 Pfam Peptidase C26 44 260 IPR011697 GO:0016787(InterPro)
Ccar2g02021 341 FunFam Folate gamma-glutamyl hydrolase 40 331 - -
Ccar2g02021 341 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 35 331 IPR015527 GO:0008242(InterPro)
Ccar2g02021 341 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 23 331 IPR015527 GO:0005773(PANTHER)|GO:0008242(InterPro)|GO:0034722(PANTHER)|GO:0046900(PANTHER)
Ccar2g02021 341 SUPERFAMILY Class I glutamine amidotransferase-like 63 329 IPR029062 -
Ccar2g02021 341 Gene3D - 40 331 IPR029062 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02021 K01307 gamma-glutamyl hydrolase [EC:3.4.19.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
37985 Ccar17g00247 Ccar2g02021
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr6:1758393 Ccar2g02021 Ccar-Chr2:67294270 transposed
Ccar Ccar-Chr6:3389570 Ccar2g02021 Ccar-Chr2:67294270 transposed
Ccar Ccar-Chr17:2739746 Ccar2g02021 Ccar-Chr2:67294270 wgd