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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02024 ATGAGGGAAGAAGAAATCGAGAAGTTGAGAGGAGTGGTTAGAGATTGCGTTAGCAAGCATCTATACTCGTCGGCGATCTTCTTCGCCGACAAGGTCGTCGCCTTCACTTCCGATCCCGCCGATATCTATATGCAAGCACAAGCCCTATTTCTTGGTCGTCATTACCGTCGTGCTTTCCACCTTCTCAATGCATCTCAGATCGTCCTCCGTGATCTTCGTTTTCGTTATCTGGCCGCCAAATGCCTCGAGGAACTGAAGGAGTGGGATCAGTGTTTGCTAATGCTTGGAGAAGCTAAGGTGGATGAACATGGAAATTTTAGTGATACCAAGGATTCTAATGTCATGTACCTGGATAAAGATAGCGAAGATCGTGAAATTAATATATCATCAGCAATATGTTTTCTTAGAGGCAAGGCATATGAAGCTCTGGAGAATCGTTCTCAGGCACGACAGTGGTACAAGGCTGCAATTAGAGCTGATCCTTTATGCTATGAGGCCCTGGAATGTCTTACTGAGAATCACATGCTAACATGTGAAGAAGGTAGCTCA 549 45.17 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVVAFTSDPADIYMQAQALFLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEELKEWDQCLLMLGEAKVDEHGNFSDTKDSNVMYLDKDSEDREINISSAICFLRGKAYEALENRSQARQWYKAAIRADPLCYEALECLTENHMLTCEEGSS 183
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02024 183 Gene3D Tetratricopeptide repeat domain 1 183 IPR011990 GO:0005515(InterPro)
Ccar2g02024 183 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 98 - -
Ccar2g02024 183 PANTHER CELL DIVISION CYCLE 16,23,27 9 175 - GO:0005680(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0031145(PANTHER)|GO:0045842(PANTHER)|GO:0051301(PANTHER)
Ccar2g02024 183 SUPERFAMILY TPR-like 39 172 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02024 - -