Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ccar2g02027	ATGTCATTGCGAAGGTCGTTCCTATCACGACGAACCAGCGGCCGATCCAATTCGCTTAAAGAATTGAGAACACCATCAATACCGTCAGAAATCAGCATTGCTAATGCTGCTTTTTGTGGAAACAACGACGTCTTTGGTGGACCGGACGGTGGGGAGAATGGAGGAGGTTCTTGGTCTAATATGTTACCGGAGATTCTAGGAGAGATAATCAAGAGAGTGGAAGCGAGCGATGACCGGTGGCCTCTCCGACGAAACCTGGTCGCTTGTGGATGCGTGTGTAAAAGGTGGAGAGAGGTTACGAGAGAGATCGTAAAGCCTCCAGTTCGCGGTGGGAAGATAACCTTCCCTTCTTGCCTTAAGCAGCCTGGCTCACGTGATTCTCCAATTCAATGCGTTATTAAAAGAAGCAAGAACTCAGTGTTTTACCTTTATCTTGCTGCTAGCCCATCATCTACAAACAAGGGCAAGTTTCTCTTGGCAGCACGGAGATATAGACATGGTGCTCATACAGAGTACTTAATTTCACTTGATCCAGATGATTCATCTCAAGGAAGCAATGCGTATGTTGGGAAATTACGGTCAGATTTTCTTGGCACTAAGTTCACAATATACGATAGCCAGCCCCCACACAATGGAGCAAAGCCCTCGAGCAGCAGATCTGGGCGGCGTTTTGCAAGCAAACAAATAAGCCCCCAAGTTCCGGCTGGAAATTTTGAGATTGGAGAGGTATCATACAAGTTCAACCTCTTGAAATCAAGGGGTCCAAGAAGAATGGTATGTTCGTTAAGGTGCACATCCACCGGAGATAACCAACCCCAAGAAGAAGCGGTGTTAAGAAGGTCGGAATCTGTTGGGTGTGGTCAAAGTCAAACGCTTTTGAGGAACAAAGCTCCAAGGTGGCATGAACACTTGCAGTGTTGGTGCTTGAATTTTCACGGTCGGGTGACTGTAGCATCCGTGAAGAACTTTCAGTTAGTGGCGACACTGGATCAAAGCCAGCCAGGAGGGAAAGGTGATGGAGAAACGGTGCTGCTCCAGTTCGGAAAGGTTGGTGACGATGTGTTCACCATGGACTTCCGTCAGCCGTTGTCGGCCTTTCACGCATTTGCCATTTGCCTCACTAGTTTCGGAACAAAGCTTGCATGCGAATGA	1152	47.83	MSLRRSFLSRRTSGRSNSLKELRTPSIPSEISIANAAFCGNNDVFGGPDGGENGGGSWSNMLPEILGEIIKRVEASDDRWPLRRNLVACGCVCKRWREVTREIVKPPVRGGKITFPSCLKQPGSRDSPIQCVIKRSKNSVFYLYLAASPSSTNKGKFLLAARRYRHGAHTEYLISLDPDDSSQGSNAYVGKLRSDFLGTKFTIYDSQPPHNGAKPSSSRSGRRFASKQISPQVPAGNFEIGEVSYKFNLLKSRGPRRMVCSLRCTSTGDNQPQEEAVLRRSESVGCGQSQTLLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATLDQSQPGGKGDGETVLLQFGKVGDDVFTMDFRQPLSAFHAFAICLTSFGTKLACE	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ccar2g02027	383	Pfam	Tub family	119	378	IPR000007	-
	Ccar2g02027	383	SUPERFAMILY	Tubby C-terminal domain-like	109	383	IPR025659	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	340	359	IPR000007	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	172	188	IPR000007	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	237	264	IPR000007	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	293	310	IPR000007	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	361	383	IPR000007	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	311	327	IPR000007	-
	Ccar2g02027	383	PRINTS	Tubby superfamily signature	188	212	IPR000007	-
	Ccar2g02027	383	ProSitePatterns	Tub family signature 1.	311	324	IPR018066	-
	Ccar2g02027	383	MobiDBLite	consensus disorder prediction	1	22	-	-
	Ccar2g02027	383	MobiDBLite	consensus disorder prediction	204	229	-	-
	Ccar2g02027	383	ProSitePatterns	Tub family signature 2.	368	383	IPR018066	-
	Ccar2g02027	383	CDD	F-box-AtTLP-like	58	102	-	-
	Ccar2g02027	383	Gene3D	Tubby Protein; Chain A	114	383	IPR025659	-
	Ccar2g02027	383	PANTHER	TUBBY-RELATED	53	382	-	-
	Ccar2g02027	383	Pfam	F-box domain	58	100	IPR001810	GO:0005515(InterPro)
	Ccar2g02027	383	SUPERFAMILY	F-box domain	57	101	IPR036047	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ccar2g02027	K19600	tubby and related proteins

Event-related genes

Select	Gene_1	Gene_2	Event_name
	38871	Ccar2g02027	Ccar8g00996

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ccar	Ccar-Chr2:67385302	Ccar8g00996	Ccar-Chr8:23991542	dispersed
	Ccar	Ccar-Chr2:67385302	Ccar1g01402	Ccar-Chr1:16357298	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ccar11g01220	.	30	406	TUB Transcription Factor family	AT2G47900	69.309	0.0	540.0
	Ccar8g00996	ACH	1	379	TUB Transcription Factor family	AT1G53320	63.84	0.0	508.0
	Ccar8g00605	ACH	1	445	TUB Transcription Factor family	AT1G25280	74.617	0.0	625.0
	Ccar4g00207	.	1	384	TUB Transcription Factor family	AT1G76900	61.979	1.76e-157	449.0
	Ccar6g00381	.	42	413	TUB Transcription Factor family	AT1G47270	53.003	1.67e-126	371.0
	Ccar17g00602	ACH	1	445	TUB Transcription Factor family	AT1G25280	69.042	0.0	547.0
	Ccar5g01165	ACH	1	393	TUB Transcription Factor family	AT2G18280	61.792	0.0	508.0
	Ccar5g00030	.	1	406	TUB Transcription Factor family	AT2G47900	72.794	0.0	579.0
	Ccar3g01541	.	11	397	TUB Transcription Factor family	AT1G16070	43.003	8.02e-95	286.0
	Ccar1g01402	ACH	1	393	TUB Transcription Factor family	AT2G18280	60.291	2.56e-175	492.0
	Ccar2g02027	ACH	1	379	TUB Transcription Factor family	AT1G53320	65.99	0.0	515.0
	Ccar2g01578	ACH	1	445	TUB Transcription Factor family	AT1G25280	64.588	0.0	510.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Ccar	Tub	2.5e-97	CL0395		TF	TUB