AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02063 ATGGCTGCTTCTCTCTCGCTTGTCTTCTTCTTCTTCAGCTTCCTGTTTCCATTCTTCTCCATCTCCAACGCCATTGTTCCCGCCGCCGACACCTTCCGATATGTCAACACCGGCGGTTTTGGCCTAGCCGATTCCGAATACGGCCCCAATTACCGCCCTCTTCCTCCTTTCACCGCACCATTCCAGCTCTGTTTCTACAACACCACCCCCAATGCCTACACTCTTAGTCTACGAATGGGTATAACACGTGATAGATCCATCATGCCCTGGGTCTGGGAAGCCAACCGCGGAAAACCCGTTCGTGAMAACGCCACTYTCTCCTTCGGCTCCGACGGSAACCTGGTTYTGGCCGATGTAGACGGYCGGATTGTMTGGCAAACAAACACCGCCAATAAGGGTGTTGTTGGGTTCGAAATACTCTCAAATGGTAACATTGTGCTCCGTAACGCTCAGGGTAATTTCATCTGGCAAAGCTTTGATTCTCCAACCGATACCATCTTGTTCGGCCAGAGTCTCCGGATCGGAGGTCCTACTAAGCTTGTGAGCAGGGCTTCCACGACGGAAAACGTTAACGGGGTGTATAGCTTCGTATTAGAGCCTAAAAGATTGGCTTTGTATTACAAGRCCATGCGTTACTGGTCATCCTCCTTTACCCAAGTGAACAAGGCCAACGGGAATTTGGTTAATGCAACGTTAGAAGTTGGAGAATCTGAATATGTTGATAGCAATTTTAACGCACTCGTGTGTCGTTTCTCCAACTCCGATGCCGGAACTTTTCTAGATCTCAACTTATTGAGATACAACAGCACGTTCTCGTATCTCCGGTTGGGCATCGATGGGAACCTAAGACTGTACAGTTATCGTCGAAATGCCGTTTCAAGTGCTTGGAGCCTGTTATTCACTTTGTTCGATAGAGGGGTGAGTGAGAGGGGGGAGGAAATCGAAGATGATTGCCAATTGCCCGATCGGTGTGGGAAGTTTGGGCTTTGTGAGAACAGCCAATGCGTCGGATGCCCGACACCGAATGGTGTTTCTGCATGGAGCGAAGATTGTGTTGCAAAGGTGGCGGGATGTGAGGCGAGTGGTTTTAGATACTACGAGCTCAAAGGGGTGGACCATTTCACGGTGAAATACAGTGCAGGGATGGGTCGGGTGAATCGGAAGGATTGCGAGAGCAAATGCACGAAGGATTGCAAGTGCTTGGGTATAAATATGCATTGCATGCAATCAATCCAATGCACACCACCATTAACCATGACTGTTCCTTCTGCTTCTCTCTCGCTTATCGTCGTCGTCTTCTTCTTCTGCTTCCTGTTTCCACTCTTCTCCATCTCCGACGCCATTGTTCCCGCTGCAGACACCTTCCGGTATGTCAACAGTGGCGATTTCGGACTATTAGAGACTGAATACAACCCAACCTACCGCTTTCTTCCTCCATTCACCACCCCTTTCCAGCTCTGTTTCTACAACACCACCCCCAACGCCTACACACTTAGTCTACGCATGGGTACCAGACGTGATGGATCCATCATGCCCTGGGTCTGGGAAGCCAACCGAGGCAAACCCGTTCGTGAAAATGCCACTTTCTCCTTTGGGTCCGATGGAAACCTTGTCTTGGCCGACGCAGACGGCCGGATTGTATGGCAGACCAACACCGCCAATAAGGGTGTCGTAGGTTTCGCCATACTCTCAAATGGTAACATGGTGCTTCGTGACGCAAAGGGTAGTTTCATCTGGCAAAGCTTTGATTCCCCAACCGATACCCTCTTGCTCGGCCAAAGTCTCCAGATCGGAGGTCCTAATAAGCTCGTGAGCAGGGCATCCACGACGGAAAACGTTAACGGGGTGTACAGTTTCGTATTAGAGCCCAAAAGAATGGCTTTGTATTACAAGACCATGCTTTACTGGTCCTCCACCTTCACCGAAGTGAATAAAGCCAATGGGAATTTGGTTAAGGCAACGTTGCAAATCGTGGAAACTGAATACGACGATGACTATTTTCATTCACTCAGGTGTCATCTATCTAACTCTAATGAAGTATCTGACCTTAATCTTGACATCATCAGATACAACAGCAACTTATCGTATCTCCGATTGGGCGTCGATGGGAATCTAAGACTCTACACTTATCGTGCCAATGTCCGTGGAAACGCATGGAGCCTGTTATTCACTTTGTTCAAGAGAGGGGTGGCCGAGAGGTGGGCAGAACATGAAGACGAGTGCCAGTTGCCAGAACGGTGCGGGAAGTTTGGGCTTTGCGAGAACAGCCAATGCGTTGGGTGCCCGTCACCGAAAGGGGTGTTTGCATGGAGCAACGACTGCGTTGCAAAGTTGCCGGGATGCCAGGCGAGTAGTTTTCGGTACTACGAGGTTAAAGGGGTGGACCATTTCACGGTGAAATACAGTGCCGGGACGGGTGAGGCGAATCGGAGGGATTGTGAGCGAAAATGCACGAAGGATTGCAAGTGCTTGGGGCGTTCCATGGAAGGCGAGTGCCAGTTACCGGAAAGATGTGGGAAGTTTGGTCTTTGTGAGGATAGCCAGTGTGTGGCKTGCCCAACACCAAATGGGCTAAGTGGGTGGAGTAAAGATTGCGATTCGAAAAAGGTGACAACTTGCAAGAGTGGTGAGTTTGGGTACTATAAGCTCGAAGGGGTTGACCATTTTATGATCAAGTACACCAGGGGAGATGGGCCAATTAAGCAAACCGAGTGCGAGACCAAATGCAGCAAGGATTACACATTCACTTACGTAAACGAAGGTGAATTCGGAGAATATATAGTCGAGTACGATGCCAATTATCGAGCTCTTTCCCCTTTTAGTAACCCTTTCCAACTTTGTTTCTATAACACCACCCCTAATGCATTCACTCTAGCTCTACGTATGGGTACTGTCCGATCCGAATCCCTCATGCGTTGGGTTTGGGAAGCTAACCGTGGCAACCCAGTTCGTGAAAACGCCACCCTCACCTTCGGCACCGACGGAAACCTGGTTCTGGCTGATGCCGACGGCAAGGTTGCATGGCAGACTAACACCGCCAACAAGGGTGTCGTTGGTTTTCAGCTGCTTCCAACTGGTAACATGGTTCTTCATGATGGGAAGGGTAATTTCATATGGCAAAGTTTTGATTCACCAACCGACACTCTYTTGGTGGGTCAATATCTCCGAGCCGGTGGTCCAAGTAAGCTTGTGAGTCGGAGTTCGGAGGTGAACAACGTCGATGGAGCATACAGCTTGGTGATGRAGCCCAAAGGGCGTTCYATGGAAGGCGAGTGCCAGTTACCGGAAAGATGTGGGAAGTTTGGTSTYTGTGAGGATAGCCAGTGTGTGGCTTGCCCAACACCAAATGGGCTAAGTGGGTGGAGTAAAGATTGCGAKTCSMAAAAGGTGACATCTTGCAAGAGTGGTGAGTTTGGGTACTATAAGCTCGAAGGRGTTGACCATTTTATGATCAAGTACACGAGGGGAGATGGGCCAACGAAGCAAACCGACTGCGAGACCAAATGCAGCAAGGATTGA 3519 49.7 MAASLSLVFFFFSFLFPFFSISNAIVPAADTFRYVNTGGFGLADSEYGPNYRPLPPFTAPFQLCFYNTTPNAYTLSLRMGITRDRSIMPWVWEANRGKPVRXNATXSFGSDGNLVLADVDGRIVWQTNTANKGVVGFEILSNGNIVLRNAQGNFIWQSFDSPTDTILFGQSLRIGGPTKLVSRASTTENVNGVYSFVLEPKRLALYYKXMRYWSSSFTQVNKANGNLVNATLEVGESEYVDSNFNALVCRFSNSDAGTFLDLNLLRYNSTFSYLRLGIDGNLRLYSYRRNAVSSAWSLLFTLFDRGVSERGEEIEDDCQLPDRCGKFGLCENSQCVGCPTPNGVSAWSEDCVAKVAGCEASGFRYYELKGVDHFTVKYSAGMGRVNRKDCESKCTKDCKCLGINMHCMQSIQCTPPLTMTVPSASLSLIVVVFFFCFLFPLFSISDAIVPAADTFRYVNSGDFGLLETEYNPTYRFLPPFTTPFQLCFYNTTPNAYTLSLRMGTRRDGSIMPWVWEANRGKPVRENATFSFGSDGNLVLADADGRIVWQTNTANKGVVGFAILSNGNMVLRDAKGSFIWQSFDSPTDTLLLGQSLQIGGPNKLVSRASTTENVNGVYSFVLEPKRMALYYKTMLYWSSTFTEVNKANGNLVKATLQIVETEYDDDYFHSLRCHLSNSNEVSDLNLDIIRYNSNLSYLRLGVDGNLRLYTYRANVRGNAWSLLFTLFKRGVAERWAEHEDECQLPERCGKFGLCENSQCVGCPSPKGVFAWSNDCVAKLPGCQASSFRYYEVKGVDHFTVKYSAGTGEANRRDCERKCTKDCKCLGRSMEGECQLPERCGKFGLCEDSQCVACPTPNGLSGWSKDCDSKKVTTCKSGEFGYYKLEGVDHFMIKYTRGDGPIKQTECETKCSKDYTFTYVNEGEFGEYIVEYDANYRALSPFSNPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGKVAWQTNTANKGVVGFQLLPTGNMVLHDGKGNFIWQSFDSPTDTLLVGQYLRAGGPSKLVSRSSEVNNVDGAYSLVMXPKGRSMEGECQLPERCGKFGXCEDSQCVACPTPNGLSGWSKDCXSXKVTSCKSGEFGYYKLEGVDHFMIKYTRGDGPTKQTDCETKCSKD 1172
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02063 1172 Gene3D - 923 1043 IPR036426 -
Ccar2g02063 1172 Gene3D - 516 640 IPR036426 -
Ccar2g02063 1172 Gene3D - 93 217 IPR036426 -
Ccar2g02063 1172 ProSiteProfiles Bulb-type lectin domain profile. 449 583 IPR001480 -
Ccar2g02063 1172 ProSiteProfiles Bulb-type lectin domain profile. 42 160 IPR001480 -
Ccar2g02063 1172 SUPERFAMILY alpha-D-mannose-specific plant lectins 953 1086 IPR036426 -
Ccar2g02063 1172 CDD B-lectin 468 585 IPR001480 -
Ccar2g02063 1172 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 214 IPR036426 -
Ccar2g02063 1172 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 484 832 IPR051343 -
Ccar2g02063 1172 SMART blect-4 468 585 IPR001480 -
Ccar2g02063 1172 SMART blect-4 928 1045 IPR001480 -
Ccar2g02063 1172 SMART blect-4 45 162 IPR001480 -
Ccar2g02063 1172 SUPERFAMILY alpha-D-mannose-specific plant lectins 493 637 IPR036426 -
Ccar2g02063 1172 ProSiteProfiles Bulb-type lectin domain profile. 925 1043 IPR001480 -
Ccar2g02063 1172 CDD B-lectin 928 1045 IPR001480 -
Ccar2g02063 1172 CDD B-lectin 45 162 IPR001480 -
Ccar2g02063 1172 Pfam D-mannose binding lectin 91 175 IPR001480 -
Ccar2g02063 1172 Pfam D-mannose binding lectin 514 597 IPR001480 -
Ccar2g02063 1172 Pfam D-mannose binding lectin 974 1055 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02063 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:67754952 Ccar9g00210 Ccar-Chr9:7019662 dispersed
Ccar Ccar-Chr2:67754952 Ccar9g00204 Ccar-Chr9:6875684 transposed