AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ccar2g02070 | ATGTTGTTGAGCTGCGGTATCGAGGATTTCCATGATGATGGTTTTGAGGGTTCAGTGGATGAGGACCACATATTTAGAGAGGTGTTCTTTGGATATGAAAGTGGTAGGAGTAAAAGTTGTTTTGTAACTGGATCAATCACTTTTGAAAATCACAAAAAGATGCCTAAAAATATCTCATTTTGTTCAGACAGTGACAATTCAGTCATGACAAGTCAGGAAGACTTTCAGAGTAGCATCTCTGAAGAGTTTGCTTTATTGATGAGAAATGGTCCCGATGTTGAAGTTAAGCGAAGTAAGGTATTGTCATCCGGAGAACATTCTAACACTAAATATTATCTGGAAAAGGTAGTTCAGTGTTCAAATGATCAGAAGGTATATGATGTAAGTAAAGCGATTACAGTACCTGTTTCTGAGGAAAGTCATGTCAAGAAGCTTTTAGTTACTAGGCCTAAACCAGTTCAATGTTCCAAGCAAAGATGGAAAGATTCTTCCTTCATTGAACTTGATAAAGATGAATTGTCGGTTCCCCTTAAAGATTCCACCGTGGATCCTAAATCCCATTTGCGTTATCACACGTATTGCTTACTTAGAGCAGCAGGGTGGGTAATTGGGAGGCGTAATAGAATCACACATTGTAAAGGGCGTGGAGAGTATGTCTTCAAATCTCCTGAAGGAAGACCAATTCGCCAATTTCATAGAGCTTGGGACATGTGTGGGAAAAGGTTAGTTGAAGATGCAAAATATATTGATTTCTGTGATGGCACACAGTGGACAGATTTGACCCAGTTTTGCTCTGATCTTTCTAATGCATTGACAGAGGTCGAAGAACTGAGAAATTCGAAAGCTGCAACTGCCTTAGCTCATCGGTGGTACGTGCTTGATCCCTTTGCGAAAGTGGTGTTCATTGACAAGAGTCTGGCCTTTCTGAAAGAAGGTAAAGAAGTCAAAGCAGAGAGAACAGTGATGAATAGTTTATATTTGAATTGTAATGTTTTAGCCTCGAAAAAAGTAGTTACAACTGCAAAGCAGAACACCAAAAAAACTGGGAAAAAGAGTAGTAGCATGGTTCCATTTCCCTCTCCAACCTGTAAATCCTATAGAACTTCTTGTCAAACAAATAACCTGTATGGAGTTCCAATTTCTTCTGCAACTGCAAATACATCAACTGGAGTGTCTGAATCTATCTATCTGTGTCAAAATGGCATGGAACTTTGGTCAGAGTGTATGGAGAAGGGTAAGAATTGCTATGAAACCCCACAAATAAGGATGGAGAATTCATCTTTTGCACTTGATGCTATCTTGAAAACGAATGAACATGGGAAATCAGAGAAGATACCCGAGATCAAGTTGACCAATTTGGTTGGACAGAATCAGTTTGGTTTTGGTTTTTATGCTCCTTATGGGTCGCATGAGATCAGTGAGAGTAGTGTTCAATTAAAATTAGATAATGCAGAAAGTTATGGAAGTTGTTTAAAGTCATCACTTTGCTCTTCGAAGGACGGCCTTAAGAAAAACCCATCAAGATTCAAGACATCAGCCCACGATTCTGCACGTCCTAAGAGCTCGGTGAGATGTGAAAAGTCCAATAAGCATCAAAAGAAGAAAAAAGGGAATTGTCACCTTAAGGATGATGATCTTTTACTCTCAGCTATACTAAGTAACCGATCTACAATAAAACGGTCAGGTGTTAAAAAGAATTCTCGTGTTCCTAAAGCTGTGAGGAAGTACAAGAGCCAAAAAGGCAGTTGCAGGTTGCTTCCACGCAGTTTTGCTAAGGGTGGACAGCAGCAGCATCACGTGCAAGGGAAGTGGTCTGGCCTTGGTGTAAGAGCTGTATTGACTTTGTTGATAGATCTTGGTGTTATTCATCTCAATGAAGTAATCCAATACCGGAACCTGAAGGATGATTCAGTGGTGAAGGATGGGCTTGTAACCCGAGATGGTATTCTATGTCGGTGTTGTAAGAAGGTGCTTTCTGTCTCTGAGTTCAAGAATCATGCTGGTTTTGGCATGAACAGTCCATGTTTGAATCTTTTTATGGAGTCTGGAAAATCATTCACCTTATGCCAACTGGAAGCTTGGTCAACTGAATACAAGGTCAGGAAAAGTGCCATACGAACTGTACACGATGAAGAGATTGACCAAAATGATGATAGTTGTGGTCTTTGTGGCGATGGAGGTGAGTTGATATGCTGCGATAACTGTCCCTCAACCTTTCATCAAGCATGCTTGTCTACACAGGAGATACCTGAAGGCAATTGGTATTGTTCAATGTGCTGTTGCTGCAGTTGCGGGAATGTAGTCAATCATATTGAGACGACATCGGTCTCTAAAGCGCTGAAATGTTTGCAGTGCGAACGGAAATATCATGAGGAATGCATCAAAGAGAACGGGATTGAGAGAGAATCGGCGGCTCCTTACTGGTTATGTGGAGAAACCTGTAAGAAGATTCATTCAGGTCTTCAGTCCTGGATTGGATGTCTGAATCCCATCTCTGATGGTTTCTCGTGGACCATTCTGAGGTGTACTGGTGAACAACAGGTTCATTCTGCTCAGAGTTTTGTTGCTCTGAAGGCGGAATGCAATCTAAAACTGGCTGTTGCTCTTACTATCATGGAGGAGTGTTTTCTTCCGATGGTGGATACAAGGACAGGCATCCATATGATACCACATGTATTGTACAATTGGGGGATCCATGGGGCAACGGTTGCAGAGTTGCCTCTCATTGCGACATGCAGCAGATATAGGCGCCGAGGAATGTGTCGGCGTCTCATGAATGCTATTGAAGAGGTAACAGTTCTATTTAGAGTACACGAGAAATGGCCGTTTTGGCTCGAGTTTTCCATTGAACTTAAAAGATGTGAATATTTGCATAAAACGTTGAAACCCCCAAATGACCCATCTACTCTGGGTTTGGCGTAA | 2922 | 41.34 | MLLSCGIEDFHDDGFEGSVDEDHIFREVFFGYESGRSKSCFVTGSITFENHKKMPKNISFCSDSDNSVMTSQEDFQSSISEEFALLMRNGPDVEVKRSKVLSSGEHSNTKYYLEKVVQCSNDQKVYDVSKAITVPVSEESHVKKLLVTRPKPVQCSKQRWKDSSFIELDKDELSVPLKDSTVDPKSHLRYHTYCLLRAAGWVIGRRNRITHCKGRGEYVFKSPEGRPIRQFHRAWDMCGKRLVEDAKYIDFCDGTQWTDLTQFCSDLSNALTEVEELRNSKAATALAHRWYVLDPFAKVVFIDKSLAFLKEGKEVKAERTVMNSLYLNCNVLASKKVVTTAKQNTKKTGKKSSSMVPFPSPTCKSYRTSCQTNNLYGVPISSATANTSTGVSESIYLCQNGMELWSECMEKGKNCYETPQIRMENSSFALDAILKTNEHGKSEKIPEIKLTNLVGQNQFGFGFYAPYGSHEISESSVQLKLDNAESYGSCLKSSLCSSKDGLKKNPSRFKTSAHDSARPKSSVRCEKSNKHQKKKKGNCHLKDDDLLLSAILSNRSTIKRSGVKKNSRVPKAVRKYKSQKGSCRLLPRSFAKGGQQQHHVQGKWSGLGVRAVLTLLIDLGVIHLNEVIQYRNLKDDSVVKDGLVTRDGILCRCCKKVLSVSEFKNHAGFGMNSPCLNLFMESGKSFTLCQLEAWSTEYKVRKSAIRTVHDEEIDQNDDSCGLCGDGGELICCDNCPSTFHQACLSTQEIPEGNWYCSMCCCCSCGNVVNHIETTSVSKALKCLQCERKYHEECIKENGIERESAAPYWLCGETCKKIHSGLQSWIGCLNPISDGFSWTILRCTGEQQVHSAQSFVALKAECNLKLAVALTIMEECFLPMVDTRTGIHMIPHVLYNWGIHGATVAELPLIATCSRYRRRGMCRRLMNAIEEVTVLFRVHEKWPFWLEFSIELKRCEYLHKTLKPPNDPSTLGLA | 973 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ccar2g02070 | 973 | PANTHER | PHD FINGER FAMILY PROTEIN | 111 | 897 | - | - | |
| Ccar2g02070 | 973 | MobiDBLite | consensus disorder prediction | 506 | 526 | - | - | |
| Ccar2g02070 | 973 | MobiDBLite | consensus disorder prediction | 506 | 537 | - | - | |
| Ccar2g02070 | 973 | SUPERFAMILY | FYVE-PHD zinc finger | 698 | 759 | IPR011011 | - | |
| Ccar2g02070 | 973 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 704 | 780 | IPR013083 | - | |
| Ccar2g02070 | 973 | ProSiteProfiles | Zinc finger PHD-type profile. | 717 | 762 | IPR019787 | - | |
| Ccar2g02070 | 973 | SMART | PHD-3 | 719 | 760 | IPR001965 | - | |
| Ccar2g02070 | 973 | SMART | PHD-3 | 761 | 815 | IPR001965 | - | |
| Ccar2g02070 | 973 | Pfam | PHD-finger | 720 | 759 | IPR019787 | - | |
| Ccar2g02070 | 973 | Pfam | Tify domain binding domain | 642 | 692 | IPR032308 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ccar2g02070 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 37979 | Ccar17g00220 | Ccar2g02070 | |
| 38879 | Ccar2g02070 | Ccar8g00989 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ccar | Ccar-Chr2:67861721 | Ccar9g00690 | Ccar-Chr9:14292599 | dispersed | |
| Ccar | Ccar-Chr17:2410275 | Ccar2g02070 | Ccar-Chr2:67861721 | wgd | |
| Ccar | Ccar-Chr2:67861721 | Ccar8g00989 | Ccar-Chr8:23906049 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ccar11g01372 | . | 1 | 1593 | PHD Transcription Factor family | AT5G12400 | 37.985 | 0.0 | 1005.0 | |
| Ccar11g01236 | . | 811 | 867 | PHD Transcription Factor family | AT1G05380 | 63.793 | 6.44e-20 | 80.1 | |
| Ccar11g01212 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.986 | 1.19e-10 | 60.5 | |
| Ccar11g01088 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 2.01e-06 | 50.1 | |
| Ccar11g00606 | ACH | 569 | 989 | PHD Transcription Factor family | AT2G36720 | 43.287 | 6.94e-120 | 370.0 | |
| Ccar11g00513 | . | 1542 | 1704 | PHD Transcription Factor family | AT5G35210 | 77.914 | 2.67e-71 | 246.0 | |
| Ccar11g00323 | . | 253 | 940 | PHD Transcription Factor family | AT2G36720 | 41.005 | 4.33e-177 | 535.0 | |
| Ccar7g00568 | ACH | 684 | 760 | PHD Transcription Factor family | AT4G14920 | 35.366 | 3.25e-07 | 53.1 | |
| Ccar8g00989 | ACH | 7 | 1025 | PHD Transcription Factor family | AT3G14980 | 42.909 | 0.0 | 779.0 | |
| Ccar9g00690 | . | 312 | 992 | PHD Transcription Factor family | AT1G05380 | 40.563 | 1.49e-147 | 478.0 | |
| Ccar9g00459 | . | 172 | 297 | PHD Transcription Factor family | AT3G53680 | 43.651 | 8.20e-24 | 102.0 | |
| Ccar15g00527 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 37.037 | 2.19e-07 | 53.9 | |
| Ccar12g00563 | . | 130 | 215 | PHD Transcription Factor family | AT5G57380 | 30.392 | 2.10e-09 | 59.7 | |
| Ccar12g00414 | ACH | 130 | 333 | PHD Transcription Factor family | AT5G57380 | 25.105 | 6.41e-11 | 63.5 | |
| Ccar6g00541 | . | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 28.676 | 7.75e-07 | 50.4 | |
| Ccar10g01199 | ACH | 206 | 973 | PHD Transcription Factor family | AT2G36720 | 39.975 | 2.04e-171 | 521.0 | |
| Ccar10g01130 | . | 130 | 300 | PHD Transcription Factor family | AT3G53680 | 38.251 | 1.81e-31 | 125.0 | |
| Ccar17g00986 | . | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 45.354 | 0.0 | 533.0 | |
| Ccar17g00871 | . | 127 | 260 | PHD Transcription Factor family | AT5G57380 | 30.345 | 5.26e-08 | 53.1 | |
| Ccar17g00842 | . | 221 | 984 | PHD Transcription Factor family | AT4G14920 | 48.21 | 0.0 | 721.0 | |
| Ccar17g00489 | . | 1546 | 1704 | PHD Transcription Factor family | AT5G35210 | 27.647 | 2.54e-10 | 61.6 | |
| Ccar17g00220 | ACH | 470 | 1025 | PHD Transcription Factor family | AT3G14980 | 45.009 | 2.09e-143 | 454.0 | |
| Ccar17g00065 | . | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 30.597 | 3.69e-10 | 60.8 | |
| Ccar5g01123 | ACH | 616 | 659 | PHD Transcription Factor family | AT2G36720 | 45.098 | 4.99e-06 | 48.1 | |
| Ccar5g00935 | . | 15 | 670 | PHD Transcription Factor family | AT5G22260 | 33.77 | 4.90e-118 | 366.0 | |
| Ccar5g00344 | ACH | 10 | 1043 | PHD Transcription Factor family | AT5G58610 | 33.392 | 2.79e-176 | 545.0 | |
| Ccar5g00026 | . | 311 | 923 | PHD Transcription Factor family | AT1G05380 | 41.272 | 4.45e-148 | 457.0 | |
| Ccar13g01636 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 37.037 | 4.17e-07 | 53.1 | |
| Ccar13g00908 | . | 1557 | 1704 | PHD Transcription Factor family | AT5G35210 | 35.135 | 4.18e-17 | 83.6 | |
| Ccar3g01162 | . | 668 | 736 | PHD Transcription Factor family | AT5G58610 | 39.726 | 2.19e-07 | 52.4 | |
| Ccar3g00879 | . | 36 | 446 | PHD Transcription Factor family | AT5G57380 | 38.78 | 1.67e-93 | 296.0 | |
| Ccar1g01537 | . | 27 | 174 | PHD Transcription Factor family | AT5G58610 | 29.054 | 1.71e-10 | 57.0 | |
| Ccar1g01436 | ACH | 681 | 760 | PHD Transcription Factor family | AT4G14920 | 35.294 | 7.28e-09 | 57.4 | |
| Ccar1g00743 | ACH | 41 | 831 | PHD Transcription Factor family | AT3G53680 | 51.351 | 0.0 | 795.0 | |
| Ccar2g02073 | . | 967 | 1027 | PHD Transcription Factor family | AT3G14980 | 62.295 | 3.36e-21 | 87.8 | |
| Ccar2g02070 | ACH | 179 | 975 | PHD Transcription Factor family | AT3G14980 | 37.698 | 7.86e-167 | 518.0 | |
| Ccar2g01920 | . | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 28.846 | 5.03e-09 | 56.2 | |
| Ccar2g01220 | . | 10 | 984 | PHD Transcription Factor family | AT4G14920 | 42.747 | 0.0 | 738.0 | |
| Ccar2g00742 | . | 3 | 685 | PHD Transcription Factor family | AT4G30200 | 42.113 | 1.82e-153 | 455.0 | |
| Ccar2g00656 | ACH | 17 | 1014 | PHD Transcription Factor family | AT5G58610 | 35.556 | 0.0 | 593.0 | |
| Ccar2g00123 | . | 242 | 985 | PHD Transcription Factor family | AT5G36670 | 36.854 | 2.05e-166 | 521.0 |