AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ccar2g02101 | ATGTTAGAAGGAAAAGCTGTGATCGGGGAGACAGATATGCTTCAGACCATGCAAGAAGATGCACTTGAGCTCGCAGCTAAAGCACTCGACTTCTTTGATGTAACTGACGCTACTGAAATCGCCCGAGTCATTAAACAGGAATTCGACAGGATGTATGGAGGTGGTTGGCAGTGTATTGTAGGGACTGATTTTGGGTCATTTGTGACTCATTGTTCAGGTTCTTTCATCCATTTTTGTATTGGGAGTCTTGCCATTTTGCTGTTTAGAGGGTCATCAGCAGTTCCAGAGAACAATATTGATGATTAA | 306 | 42.81 | MLEGKAVIGETDMLQTMQEDALELAAKALDFFDVTDATEIARVIKQEFDRMYGGGWQCIVGTDFGSFVTHCSGSFIHFCIGSLAILLFRGSSAVPENNIDD | 101 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ccar2g02101 | 101 | FunFam | Dynein light chain | 1 | 90 | - | - | |
| Ccar2g02101 | 101 | CDD | DLC-like-DYNLL1-DYNLL2 | 5 | 89 | - | - | |
| Ccar2g02101 | 101 | Gene3D | Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 2 | 90 | IPR037177 | GO:0007017(InterPro)|GO:0030286(InterPro) | |
| Ccar2g02101 | 101 | SMART | Dynein-light-2 | 1 | 90 | IPR001372 | GO:0007017(InterPro)|GO:0030286(InterPro) | |
| Ccar2g02101 | 101 | PANTHER | DYNEIN LIGHT CHAIN | 7 | 89 | IPR001372 | GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER) | |
| Ccar2g02101 | 101 | SUPERFAMILY | DLC | 1 | 90 | IPR037177 | GO:0007017(InterPro)|GO:0030286(InterPro) | |
| Ccar2g02101 | 101 | Pfam | Dynein light chain type 1 | 5 | 89 | IPR001372 | GO:0007017(InterPro)|GO:0030286(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ccar2g02101 | K10418 | dynein light chain LC8-type |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ccar | Ccar-Chr2:68226057 | Ccar3g01658 | Ccar-Chr3:38201830 | dispersed | |
| Ccar | Ccar-Chr2:68226057 | Ccar17g01100 | Ccar-Chr17:35780075 | transposed |