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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02118 AACTTCACCATCAAGGTGGCTGTTAAAGAACGTTCGTGGCCAAGAACAGTGACAAAGATATTGAAAAGTGTTGAAGGATATGGAGGGTATAACGGGTATGGTTATCCTAGATATGGAAGGAACGATGCTTACAATCATCTAGAATGTGCAGGGAATGCTTCTGATTGTAATGGACATCATACAGAAAAGCCAAAAACTCCAGAGAAATCAGCTTCTTCTCCTCCTCCTTCATCAAGTGTTTTCCAAAAGCTTAGTAGCAAAATATCATGTGTCAATGGTGCCAATTGTTGCAGTTTGATCCTTTGCCAGAATCCGTTGCCGGAGCTCTACATGTCGCCTGAAGCCTCGTCATCGTCATCGCCATGGCAACACCTGGAAGAAGACTCAGCGACGCCGGCGCCGATAAACACCGCCAGCCGCCACACGTTGGTCTCGCCGGCCGGAATTTTTGAACTGGGATTTTTCCGGCCAGAAGCTGGTAGGTCTGAGGACAGGTACCTTGGTATATGGTACAAGAAAATCGCAGTTAAAACAGTGGTTTGGGTTGCCAACAGAGGCTTCCCGGTCACCGGAGCATCATCACACCATGTCTTAAAGATCGCCGATCCCGGAATTCTCGTCCTCATGAACAATATCACCGTCGTCTGGTCACTCAGTACAACGATAATATCACCAAACGCAACCGCAAAGCTTCATGACACCGGAAATCTAGTCGTGATGGACGAATACAAAAGTGATATCTGGAAGAGTTTCAATCACCCAACTGATACTCGTTATCGTTTTTTGGAAGGGTGTCCTAAGCTATGCCAACGGGAAGTTTACGGAAATGGTCAAACCATAAAACCAAATATGGTTTTGTGGGTCAACCATTTTCGTATTCCCAACAAAAACAAGGTGAAATGGTCAAGTTTCGTGAAGCACTCGATGGCGATTCAACGAAGCACTCTAATGGCAAGCGAGGGTGGAAAAGAGCCATTGCTAATAGGACAACAAGAACCTGGACCTGAGACCAATTCTTTTGGTTCATTTAAAAGCAGAAACCTGCGACGCTGTAAAAGCGCCCCCATGGTGGAACCTGTTCCCGAGGATACCAAAATGGACCGCTTTTATGACGGCCCGAGATCTATTTTCGAGCAACTCAAGCCAAAATTCGGGAGGGTAGCCCTCTACTTGTTTGGGTACTTGGGTCTAAGTACATTTTGCTTTTATTTGGTTAGAAACCAAATTACTGGAAAGGGAACACAAGGCATTGTGGACGGTCTTTATTTCTGCGTTGTAACGATGACCACCGTTGGGTATGGAGACCTTCTACCGAATAGCACCACCACGAAACTACTCGCGTGTGCTTTTGTATTTTCCGGGATGGCCCTTGTGGGACTTAGTCTAAGTAAAGCCGCCGACTGTTTGGTGGAAAATCAAGAAATCTTGTTGGTGAAAGCATTGCATTTGCGTCAAAAAGCTGGTTCGATGGAAATTCTGAAAGAAACTGAAACCAATAGAGTAAGATACAGGTGTATAATCTTCTCGGTTTTGCTTATGATCCTCATAACTGCAGGAACGATCTTCTTAATAACGGTTGAGAAAATGGACTTTATCGATGCCTTCTATTGTGTGTGTACCACGATGACAACTCTTGGTTACGGAGATAAAACGTTCTCGACAATGGCTGGGCGTATTTTCGCAATATTCTGGATTCTAATGAGCACTATATGTTTAGCTCAGGTGTTGTTTGCTTTTGCTGAACTGTATACGGAGAACAGGCAGAGGGAATTGGTCCGATGGGTTCTTACAAGAAAAACAACCGTGGCTGACTTGGAAGCAGCTGATCTTAATGATGATGGTCTTGTGGGGGGTGCTGAATTTGTGATTTATAAGCTAAAAGAGATGGGAAAGATCAACCAAGAAGACATTGCGGTTATCATGGCAGAGTTCGAAAAGCTTGATGCGGACGACTCAGGGTCTTTGTCTGTCGCCGACATTTCCCAAGCCCAATCACAATAG 2001 44.93 NFTIKVAVKERSWPRTVTKILKSVEGYGGYNGYGYPRYGRNDAYNHLECAGNASDCNGHHTEKPKTPEKSASSPPPSSSVFQKLSSKISCVNGANCCSLILCQNPLPELYMSPEASSSSSPWQHLEEDSATPAPINTASRHTLVSPAGIFELGFFRPEAGRSEDRYLGIWYKKIAVKTVVWVANRGFPVTGASSHHVLKIADPGILVLMNNITVVWSLSTTIISPNATAKLHDTGNLVVMDEYKSDIWKSFNHPTDTRYRFLEGCPKLCQREVYGNGQTIKPNMVLWVNHFRIPNKNKVKWSSFVKHSMAIQRSTLMASEGGKEPLLIGQQEPGPETNSFGSFKSRNLRRCKSAPMVEPVPEDTKMDRFYDGPRSIFEQLKPKFGRVALYLFGYLGLSTFCFYLVRNQITGKGTQGIVDGLYFCVVTMTTVGYGDLLPNSTTTKLLACAFVFSGMALVGLSLSKAADCLVENQEILLVKALHLRQKAGSMEILKETETNRVRYRCIIFSVLLMILITAGTIFLITVEKMDFIDAFYCVCTTMTTLGYGDKTFSTMAGRIFAIFWILMSTICLAQVLFAFAELYTENRQRELVRWVLTRKTTVADLEAADLNDDGLVGGAEFVIYKLKEMGKINQEDIAVIMAEFEKLDADDSGSLSVADISQAQSQ 666
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02118 666 ProSitePatterns EF-hand calcium-binding domain. 648 660 IPR018247 -
Ccar2g02118 666 PRINTS Two pore domain K+ channel signature 543 552 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Ccar2g02118 666 PRINTS Two pore domain K+ channel signature 426 454 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Ccar2g02118 666 SUPERFAMILY Voltage-gated potassium channels 497 600 - -
Ccar2g02118 666 SUPERFAMILY Voltage-gated potassium channels 382 476 - -
Ccar2g02118 666 SMART blect-4 135 254 IPR001480 -
Ccar2g02118 666 MobiDBLite consensus disorder prediction 113 132 - -
Ccar2g02118 666 Pfam D-mannose binding lectin 178 257 IPR001480 -
Ccar2g02118 666 Pfam Ion channel 511 584 IPR013099 -
Ccar2g02118 666 Pfam Ion channel 391 470 IPR013099 -
Ccar2g02118 666 CDD B-lectin 142 254 IPR001480 -
Ccar2g02118 666 Gene3D - 486 590 - -
Ccar2g02118 666 Gene3D - 382 475 - -
Ccar2g02118 666 ProSiteProfiles Bulb-type lectin domain profile. 128 252 IPR001480 -
Ccar2g02118 666 Gene3D - 132 252 IPR036426 -
Ccar2g02118 666 MobiDBLite consensus disorder prediction 58 80 - -
Ccar2g02118 666 SUPERFAMILY alpha-D-mannose-specific plant lectins 165 261 IPR036426 -
Ccar2g02118 666 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 417 598 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02118 K05389 potassium channel subfamily K, other eukaryote
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Event-related genes

Select Gene_1 Gene_2 Event_name
37927 Ccar17g00064 Ccar2g02118
38884 Ccar2g02118 Ccar6g00548
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:68432740 Ccar2g02114 Ccar-Chr2:68390658 dispersed
Ccar Ccar-Chr2:68411153 Ccar2g02118 Ccar-Chr2:68432740 proximal
Ccar Ccar-Chr10:115193 Ccar2g02118 Ccar-Chr2:68432740 transposed
Ccar Ccar-Chr10:7448133 Ccar2g02118 Ccar-Chr2:68432740 transposed
Ccar Ccar-Chr12:6433708 Ccar2g02118 Ccar-Chr2:68432740 transposed
Ccar Ccar-Chr9:12312433 Ccar2g02118 Ccar-Chr2:68432740 transposed
Ccar Ccar-Chr17:463598 Ccar2g02118 Ccar-Chr2:68432740 wgd
Ccar Ccar-Chr2:68432740 Ccar6g00548 Ccar-Chr6:16186792 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00208 . 25 677 Ion Channels gene family AT5G46240 49.268 0.0 663.0
Ccar14g00129 . 13 699 Ion Channels gene family AT2G29120 31.972 2.67e-100 331.0
Ccar11g01101 . 30 662 Ion Channels gene family AT4G32650 55.363 0.0 683.0
Ccar11g00644 . 548 726 Ion Channels gene family AT2G25600 33.889 1.01e-14 70.1
Ccar11g00572 . 6 634 Ion Channels gene family AT2G28260 52.623 0.0 687.0
Ccar11g00506 ACH 548 727 Ion Channels gene family AT4G32500 31.553 2.71e-17 83.6
Ccar11g00293 ACH 1 678 Ion Channels gene family AT2G28260 66.761 0.0 949.0
Ccar16g00908 . 39 714 Ion Channels gene family AT5G53130 62.206 0.0 868.0
Ccar16g00584 . 1 725 Ion Channels gene family AT2G24610 63.043 0.0 929.0
Ccar7g00766 . 23 897 Ion Channels gene family AT3G51480 57.8 0.0 1045.0
Ccar7g00636 . 390 431 Ion Channels gene family AT4G30560 73.81 2.84e-14 65.1
Ccar7g00127 . 35 699 Ion Channels gene family AT5G14870 56.046 0.0 758.0
Ccar7g00014 ACH 126 778 Ion Channels gene family AT3G27170 77.37 0.0 1030.0
Ccar8g01171 . 53 878 Ion Channels gene family AT2G29120 44.062 0.0 709.0
Ccar8g00965 . 91 757 Ion Channels gene family AT5G11180 33.089 1.17e-113 362.0
Ccar8g00964 . 407 631 Ion Channels gene family AT2G29110 31.624 4.40e-29 114.0
Ccar8g00963 . 4 781 Ion Channels gene family AT5G11210 29.317 8.29e-94 323.0
Ccar8g00962 . 180 322 Ion Channels gene family AT2G24720 25.694 1.44e-13 67.0
Ccar8g00947 . 58 932 Ion Channels gene family AT1G05200 56.803 0.0 1025.0
Ccar8g00574 . 17 795 Ion Channels gene family AT4G22200 63.183 0.0 1018.0
Ccar8g00373 . 11 717 Ion Channels gene family AT5G57940 50.7 0.0 620.0
Ccar8g00299 . 7 856 Ion Channels gene family AT2G26650 60.687 0.0 1083.0
Ccar8g00129 . 30 552 Ion Channels gene family AT2G28260 51.908 0.0 567.0
Ccar9g00877 . 41 814 Ion Channels gene family AT5G48410 40.344 0.0 565.0
Ccar9g00882 . 248 450 Ion Channels gene family AT5G48400 28.137 5.81e-14 71.2
Ccar9g00869 . 43 820 Ion Channels gene family AT3G07520 37.638 3.59e-172 551.0
Ccar9g00854 . 425 742 Ion Channels gene family AT5G48400 40.87 1.71e-74 247.0
Ccar9g00509 . 57 359 Ion Channels gene family AT4G01840 56.604 3.15e-120 352.0
Ccar15g00899 . 33 180 Ion Channels gene family AT4G32650 49.664 9.46e-37 135.0
Ccar12g01317 . 822 941 Ion Channels gene family AT2G17260 47.934 3.25e-28 111.0
Ccar12g01318 . 30 523 Ion Channels gene family AT4G35290 56.68 0.0 587.0
Ccar12g01315 . 91 517 Ion Channels gene family AT4G35290 57.611 8.74e-173 515.0
Ccar12g01219 . 41 702 Ion Channels gene family AT4G03560 68.012 0.0 959.0
Ccar12g00516 . 17 385 Ion Channels gene family AT4G18160 57.254 8.51e-151 431.0
Ccar4g00765 . 4 737 Ion Channels gene family AT1G19780 61.469 0.0 897.0
Ccar4g00625 . 36 700 Ion Channels gene family AT5G14870 58.021 0.0 776.0
Ccar6g00544 . 211 302 Ion Channels gene family AT5G55630 35.87 1.51e-14 67.0
Ccar6g00543 . 60 308 Ion Channels gene family AT5G55630 32.806 1.82e-32 120.0
Ccar6g00546 . 86 335 Ion Channels gene family AT5G55630 32.422 1.09e-30 121.0
Ccar6g00545 . 86 324 Ion Channels gene family AT5G55630 30.126 8.42e-23 98.2
Ccar6g00548 ACH 61 358 Ion Channels gene family AT5G55630 55.705 3.52e-108 348.0
Ccar6g00547 ACH 86 335 Ion Channels gene family AT5G55630 32.812 1.15e-30 121.0
Ccar10g00626 . 504 713 Ion Channels gene family AT5G37500 30.556 9.10e-15 75.9
Ccar10g00286 . 20 385 Ion Channels gene family AT4G18160 62.032 2.41e-154 440.0
Ccar10g00011 . 75 357 Ion Channels gene family AT5G55630 53.71 9.60e-107 336.0
Ccar17g01040 . 381 771 Ion Channels gene family AT5G11210 33.163 1.56e-58 205.0
Ccar17g01038 . 379 788 Ion Channels gene family AT5G11210 30.193 7.55e-48 174.0
Ccar17g01039 . 444 630 Ion Channels gene family AT2G24720 32.292 2.38e-25 103.0
Ccar17g01037 . 355 793 Ion Channels gene family AT5G11210 31.778 2.30e-61 213.0
Ccar17g01035 . 487 873 Ion Channels gene family AT2G17260 34.25 2.00e-59 209.0
Ccar17g00709 . 1 791 Ion Channels gene family AT5G26240 82.331 0.0 1244.0
Ccar17g00620 ACH 19 726 Ion Channels gene family AT5G15410 65.39 0.0 924.0
Ccar17g00153 . 83 693 Ion Channels gene family AT5G54250 71.104 0.0 895.0
Ccar17g00064 ACH 58 357 Ion Channels gene family AT5G55630 47.667 1.49e-89 273.0
Ccar5g01057 . 87 216 Ion Channels gene family AT5G26240 80.769 1.94e-64 207.0
Ccar5g00936 . 81 737 Ion Channels gene family AT3G02850 75.495 0.0 1078.0
Ccar5g00718 . 52 912 Ion Channels gene family AT2G29120 40.678 0.0 638.0
Ccar13g01179 . 84 598 Ion Channels gene family AT3G02850 68.35 0.0 745.0
Ccar13g00053 . 556 685 Ion Channels gene family AT5G37500 27.338 1.76e-06 49.7
Ccar3g01814 . 10 879 Ion Channels gene family AT2G29110 43.228 0.0 690.0
Ccar1g02559 . 12 528 Ion Channels gene family AT1G42540 60.542 0.0 684.0
Ccar1g02349 . 6 741 Ion Channels gene family AT3G17700 60.133 0.0 876.0
Ccar1g02342 . 5 745 Ion Channels gene family AT3G17700 54.461 0.0 744.0
Ccar1g02337 . 6 229 Ion Channels gene family AT3G17700 34.413 5.55e-32 120.0
Ccar1g02336 . 240 745 Ion Channels gene family AT3G17700 64.775 0.0 640.0
Ccar1g01793 . 568 644 Ion Channels gene family AT5G15410 51.948 1.35e-23 90.5
Ccar1g01717 . 538 713 Ion Channels gene family AT5G37500 35.393 3.29e-15 76.3
Ccar1g01618 . 16 824 Ion Channels gene family AT3G02850 65.271 0.0 1123.0
Ccar1g01515 . 3 821 Ion Channels gene family AT3G51480 60.291 0.0 1045.0
Ccar1g01137 . 54 726 Ion Channels gene family AT5G15410 50.434 0.0 621.0
Ccar1g01005 ACH 158 519 Ion Channels gene family AT5G40890 76.243 0.0 598.0
Ccar1g00891 ACH 1 678 Ion Channels gene family AT2G28260 61.431 0.0 854.0
Ccar1g00543 . 238 325 Ion Channels gene family AT5G27100 37.895 4.07e-18 80.5
Ccar1g00541 . 614 677 Ion Channels gene family AT5G48400 50.0 3.91e-10 55.8
Ccar1g00025 . 226 716 Ion Channels gene family AT5G53130 73.084 0.0 733.0
Ccar2g02118 ACH 52 357 Ion Channels gene family AT5G55630 60.784 4.37e-130 386.0
Ccar2g02061 . 202 692 Ion Channels gene family AT5G54250 69.654 0.0 684.0
Ccar2g01524 . 52 726 Ion Channels gene family AT5G15410 51.241 0.0 609.0
Ccar2g01473 . 137 779 Ion Channels gene family AT5G49890 69.051 0.0 852.0
Ccar2g01003 . 11 770 Ion Channels gene family AT2G29120 35.742 3.30e-147 452.0
Ccar2g01001 . 34 700 Ion Channels gene family AT5G11180 34.724 5.20e-122 382.0
Ccar2g00996 . 26 841 Ion Channels gene family AT2G29120 36.034 1.43e-160 491.0
Ccar2g00918 . 7 857 Ion Channels gene family AT2G26650 64.874 0.0 1158.0
Ccar2g00864 . 505 713 Ion Channels gene family AT5G37500 28.972 8.40e-13 69.7
Ccar2g00854 . 112 765 Ion Channels gene family AT5G33280 73.13 0.0 944.0
Ccar2g00847 . 9 717 Ion Channels gene family AT5G57940 77.235 0.0 1120.0
Ccar2g00642 . 331 514 Ion Channels gene family AT4G30560 53.261 1.19e-53 180.0