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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02121 ATGCCTCGTTTCCTTTTCTTCATCTCTCTCTTCCTCCTCCTCCTCCTTTCCGCCTCCGCCCACGGCGGCGGTGATCAAGACGACGACGAAGCACCCGAGGCCGGAAAACCCAACCTCCGATCAAGATCCTTGATTCTTGTAAAGATATGGTGTTTGATACTGGTGTTTCTTGGGACTTTCATTGGTGGTGTTTCTCCGTACTTCTTCAAATGGAATGAGGGATTCTTGGTTTTGGGTACCCAGTTCGCCGGCGGCGTGTTTCTTGGAACCGCCATGATGCATTTTCTCAGTGATGCCAATGAAACTTTTAAAGATTTGACCACCGTTGAATACCCTTTTGCTTTTATGCTGGCTTGTGGTGGTTATTTGCTAACTATGCTCGCTGATTGCCTCATTTCTTATGTTTATGGAAAACAGCCAAATGGGTCTGCTTCTGATGACCTTGAACATCAAGGGAACAACAGGAATGGAAAAGAGTCGAAAGACATCAAGATTGGAATGTCATCAGCTTCTTCACTAGGAGACAGCATCTTGTTAATAGTCGCATTGTGTTTCCATTCCGTCTTCGAAGGAATCGCGATTGGAATCGCGGACACCAAAGCCGATGCTTGGAAAGCTCTATGGACAATCTCTCTTCACAAGATCTTTGCAGCCATTGCAATGGGAATTGCTCTTCTAAGAATGATTCCAGACCGCCCTTTCTTATCATGCGCATCTTACGCCTTTGCCTTTGGAATCTCGAGTCCGATCGGAGTCGCAATCGGGATCGTCATCGATGCAACGACACAGGGTCGAGTTGCAGATTGGATATTTGCGATATCGATGGGAATTGCTTGTGGGGTGTTTATATATGTATCGATAAACCATTTACTTCGAGGTTATCAGGCACAAAAGCCGTCTTCAATCGACACTCCGAGCCTCAAATTGTTGGCTGTAACAATGGGAATAGGGGTGATTGCTGTTGTTATGATCTGGGATACATGA 984 45.93 MPRFLFFISLFLLLLLSASAHGGGDQDDDEAPEAGKPNLRSRSLILVKIWCLILVFLGTFIGGVSPYFFKWNEGFLVLGTQFAGGVFLGTAMMHFLSDANETFKDLTTVEYPFAFMLACGGYLLTMLADCLISYVYGKQPNGSASDDLEHQGNNRNGKESKDIKIGMSSASSLGDSILLIVALCFHSVFEGIAIGIADTKADAWKALWTISLHKIFAAIAMGIALLRMIPDRPFLSCASYAFAFGISSPIGVAIGIVIDATTQGRVADWIFAISMGIACGVFIYVSINHLLRGYQAQKPSSIDTPSLKLLAVTMGIGVIAVVMIWDT 327
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02121 327 PANTHER ZINC-IRON TRANSPORTER 44 325 - GO:0005385(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Ccar2g02121 327 Gene3D - 23 151 - -
Ccar2g02121 327 Pfam ZIP Zinc transporter 46 322 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02121 K14709 solute carrier family 39 (zinc transporter), member 1/2/3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:7289956 Ccar2g02121 Ccar-Chr2:68454769 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00509 . 98 1174 InOrganic Solute Cotransporters gene family gene family AT4G00630 57.217 0.0 1079.0
Ccar14g00418 . 29 360 InOrganic Solute Cotransporters gene family gene family AT1G05300 53.869 8.28e-127 366.0
Ccar14g00391 . 32 650 InOrganic Solute Cotransporters gene family gene family AT5G13550 62.538 0.0 782.0
Ccar14g00383 . 25 143 InOrganic Solute Cotransporters gene family gene family AT5G59040 43.697 7.18e-28 99.0
Ccar16g00851 . 51 1173 InOrganic Solute Cotransporters gene family gene family AT4G00630 64.756 0.0 1319.0
Ccar16g00255 ACH 7 398 InOrganic Solute Cotransporters gene family gene family AT2G46800 66.327 4.10e-165 466.0
Ccar7g00409 ACH 27 508 InOrganic Solute Cotransporters gene family gene family AT2G23150 75.155 0.0 747.0
Ccar8g00148 . 17 631 InOrganic Solute Cotransporters gene family gene family AT5G19600 57.63 0.0 689.0
Ccar9g00704 . 10 637 InOrganic Solute Cotransporters gene family gene family AT4G02700 62.58 0.0 743.0
Ccar9g00602 . 30 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 44.474 0.0 634.0
Ccar9g00401 . 59 107 InOrganic Solute Cotransporters gene family gene family AT5G59030 60.0 1.69e-11 54.3
Ccar9g00299 . 24 531 InOrganic Solute Cotransporters gene family gene family AT1G80830 44.444 7.57e-124 370.0
Ccar9g00048 ACH 25 143 InOrganic Solute Cotransporters gene family gene family AT5G59040 42.017 9.29e-26 93.6
Ccar15g01251 ACH 62 432 InOrganic Solute Cotransporters gene family gene family AT3G58810 62.051 9.65e-160 455.0
Ccar15g00378 . 28 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 66.172 2.05e-160 451.0
Ccar15g00379 ACH 10 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 63.662 3.73e-157 443.0
Ccar12g01231 . 9 435 InOrganic Solute Cotransporters gene family gene family AT2G25680 68.046 0.0 580.0
Ccar12g00854 . 489 569 InOrganic Solute Cotransporters gene family gene family AT1G78000 72.84 1.07e-31 117.0
Ccar12g00853 . 128 183 InOrganic Solute Cotransporters gene family gene family AT1G22150 73.214 1.06e-18 77.0
Ccar12g00784 . 248 332 InOrganic Solute Cotransporters gene family gene family AT2G32270 65.882 2.97e-33 116.0
Ccar12g00782 ACH 29 165 InOrganic Solute Cotransporters gene family gene family AT1G05300 51.773 3.73e-42 143.0
Ccar12g00234 . 1 630 InOrganic Solute Cotransporters gene family gene family AT1G23090 72.317 0.0 924.0
Ccar12g00007 . 366 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 83.55 0.0 1048.0
Ccar4g00838 ACH 408 490 InOrganic Solute Cotransporters gene family gene family AT3G15990 71.084 9.26e-34 119.0
Ccar4g00549 . 2 508 InOrganic Solute Cotransporters gene family gene family AT1G47240 77.132 0.0 815.0
Ccar4g00274 . 20 609 InOrganic Solute Cotransporters gene family gene family AT1G22150 75.424 0.0 902.0
Ccar6g00151 . 3 518 InOrganic Solute Cotransporters gene family gene family AT1G15960 53.061 0.0 524.0
Ccar17g00810 . 158 229 InOrganic Solute Cotransporters gene family gene family AT1G30450 63.529 1.65e-28 112.0
Ccar17g00068 . 49 355 InOrganic Solute Cotransporters gene family gene family AT3G12750 60.883 7.76e-139 397.0
Ccar5g01023 . 23 500 InOrganic Solute Cotransporters gene family gene family AT2G01280 36.832 2.14e-78 260.0
Ccar5g00375 . 45 169 InOrganic Solute Cotransporters gene family gene family AT5G59030 61.417 7.22e-46 147.0
Ccar5g00338 . 13 341 InOrganic Solute Cotransporters gene family gene family AT2G30080 66.765 9.35e-159 446.0
Ccar13g00976 ACH 414 794 InOrganic Solute Cotransporters gene family gene family AT2G40540 71.129 0.0 543.0
Ccar13g00830 . 99 620 InOrganic Solute Cotransporters gene family gene family AT5G13550 59.191 0.0 548.0
Ccar13g00211 ACH 11 357 InOrganic Solute Cotransporters gene family gene family AT1G31260 62.784 1.86e-146 432.0
Ccar13g00009 . 113 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 68.835 0.0 1247.0
Ccar13g00089 . 28 613 InOrganic Solute Cotransporters gene family gene family AT3G26570 70.401 0.0 740.0
Ccar3g01627 . 4 440 InOrganic Solute Cotransporters gene family gene family AT1G80310 69.731 0.0 536.0
Ccar3g01641 ACH 1 653 InOrganic Solute Cotransporters gene family gene family AT3G15990 43.673 2.77e-172 502.0
Ccar3g01548 . 1 519 InOrganic Solute Cotransporters gene family gene family AT1G15960 71.132 0.0 750.0
Ccar3g00689 . 1 662 InOrganic Solute Cotransporters gene family gene family AT5G13550 69.162 0.0 906.0
Ccar3g00486 . 85 156 InOrganic Solute Cotransporters gene family gene family AT1G80310 55.556 1.56e-11 56.2
Ccar3g00370 . 23 672 InOrganic Solute Cotransporters gene family gene family AT1G77990 60.666 0.0 781.0
Ccar3g00369 . 48 673 InOrganic Solute Cotransporters gene family gene family AT5G10180 60.769 0.0 779.0
Ccar3g00368 . 20 656 InOrganic Solute Cotransporters gene family gene family AT1G22150 62.623 0.0 818.0
Ccar1g01269 ACH 4 493 InOrganic Solute Cotransporters gene family gene family AT5G67330 72.561 0.0 738.0
Ccar1g00222 ACH 423 794 InOrganic Solute Cotransporters gene family gene family AT2G40540 73.158 0.0 563.0
Ccar2g02121 . 20 326 InOrganic Solute Cotransporters gene family gene family AT1G55910 64.78 1.69e-147 416.0
Ccar2g01668 . 6 629 InOrganic Solute Cotransporters gene family gene family AT4G04850 68.372 0.0 786.0
Ccar2g01613 . 26 653 InOrganic Solute Cotransporters gene family gene family AT1G22150 74.045 0.0 956.0
Ccar2g00619 . 16 375 InOrganic Solute Cotransporters gene family gene family AT2G29410 50.678 1.43e-122 358.0
Ccar2g00671 . 2 146 InOrganic Solute Cotransporters gene family gene family AT5G20650 52.414 1.38e-49 154.0
Ccar2g00610 . 1 353 InOrganic Solute Cotransporters gene family gene family AT5G59520 61.281 2.48e-140 400.0
Ccar2g00525 . 32 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 54.655 1.51e-119 347.0
Ccar2g00444 ACH 26 146 InOrganic Solute Cotransporters gene family gene family AT5G59040 40.496 2.60e-25 92.0
Ccar2g00402 . 50 187 InOrganic Solute Cotransporters gene family gene family AT2G37920 76.812 2.00e-77 234.0