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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02126 ATGGATCAATCACTTTCAGAGGGAACACAAACACAAGAGAACACTAATTGGGAGCTAGCATTGCATCATTTCGAGAACCTGATTGCAACCGGGAGTGACGCTTTGCAAGTGCAGGCTATAATTAAGCTTTCTCGCTTGTCTAACCGTGCTCCTGAGAGAATATTGATATGCACCGTGCCAATCTTAGTGGAGCATCTCGACACGTCATCCGAAACTACAAATGATGCTATCTTGAAAGCCTCTGCATACTGTTTGAAGTGCATTTCTTGTCAAGGGGACGGAAGGCTGGCGGTAAGCATAGGCCAATCTGGGGCCATTCATCGCATCCTCTGCCTTTTACCTCAATCTGAAGTTGGTTTACAAAAAGTTCTTCTGAAGTGCCTTCGAAATCTTGTAGCATTTGATGGTCCTAATCGGGTTAATGTAGTGAGAATTGGTGGGTTGAAAGTCATCATTGATATGTTAAATTCTTGTCCTGACGTTTTGAGACCTCTCTTCTTGGATATTTTGAGTGCACTTGCTCTTTTAAGAGAGGTTAGACGGTCCATTTACAATTTGCGGGTGGTTCGTTTACTTGTTGAATCAGGTAAAGTCGGGAATATGGCTTCTAGGACTAGAGCTGCTCAGGCGATTGGGTTACTTGGGCTGGTTAAAAGAGCAAGACGTGATCTTGTTAATGCGGGTGCCATAGAGGTTCTTGTTGATTTGCTTCGAAATGGCAACACCTCAACAAAGATAGTTGCTGGTAATGCCTTGGGGGTAATATCGTCACATGTTGAGTATATCAGACCTGTTGCTGAACATGGGGTCATTCCTTTATATGCCGAGCTTCTTCAAGAACAGGAGCCATTGGGGAGGGAGATTGCAGAGGATGTGTTTTGCATTTTAGCTGTTACGGATACTAATGCCATCACAATTGTTGAACATTTGGTGACGATTTTGAGAGGAAATGATAACGGAAGCATAGCAGCAGCTGCGGATGTTTTGTGGGATCTTTCAAGTTATAAGCATGTATTGCCTATTATTCATAGGTCTGGTGCGATCCTGCTTTTGGTGGAGCTTTTGAGAAGTAGTGAGGATACTAATGTTAGGGAGAACGTTTGTGGGGTGATTGCGCAGTTGAGTTACAACGATGCTGAGAGGGATTTGATTGCTAGTTTGGGGGGGATTTCTCTTTTGATTAGCATGTTAGAAGATGAGTCGGAGGAACTCAGAGGTAATGCTGCTCAGGCGCTTGTTAACTTTTACGAGGACGTGTTATTTCGCGATAGAATGTTGGGTGCAGTGGATCATCCTTTGTTCCTGAGCATGATGGAGAGGGTGGGGCAGATACGTGGGGGAGAATTACGTATGGCTGCTTCAGTGAGACAGATGACTCTTGACGAGTTAACTTGGAATCCTGGTCTGTAA 1410 44.26 MDQSLSEGTQTQENTNWELALHHFENLIATGSDALQVQAIIKLSRLSNRAPERILICTVPILVEHLDTSSETTNDAILKASAYCLKCISCQGDGRLAVSIGQSGAIHRILCLLPQSEVGLQKVLLKCLRNLVAFDGPNRVNVVRIGGLKVIIDMLNSCPDVLRPLFLDILSALALLREVRRSIYNLRVVRLLVESGKVGNMASRTRAAQAIGLLGLVKRARRDLVNAGAIEVLVDLLRNGNTSTKIVAGNALGVISSHVEYIRPVAEHGVIPLYAELLQEQEPLGREIAEDVFCILAVTDTNAITIVEHLVTILRGNDNGSIAAAADVLWDLSSYKHVLPIIHRSGAILLLVELLRSSEDTNVRENVCGVIAQLSYNDAERDLIASLGGISLLISMLEDESEELRGNAAQALVNFYEDVLFRDRMLGAVDHPLFLSMMERVGQIRGGELRMAASVRQMTLDELTWNPGL 469
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02126 469 Gene3D - 166 422 IPR011989 -
Ccar2g02126 469 Coils Coil 394 414 - -
Ccar2g02126 469 Gene3D - 6 163 IPR011989 -
Ccar2g02126 469 Pfam Armadillo-beta-catenin-like repeat 221 257 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 Pfam Armadillo-beta-catenin-like repeat 344 375 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SUPERFAMILY ARM repeat 74 417 IPR016024 -
Ccar2g02126 469 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 12 417 - -
Ccar2g02126 469 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 346 389 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 216 257 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 48 90 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 335 376 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 299 334 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 377 417 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 93 133 IPR000225 GO:0005515(InterPro)
Ccar2g02126 469 SMART arm-5 258 298 IPR000225 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02126 - -
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00492 ACH 490 754 U-box gene family AT3G54790 27.698 1.67e-17 84.3
Ccar14g00375 . 9 405 U-box gene family AT2G35930 33.575 3.99e-66 215.0
Ccar14g00178 . 1 726 U-box gene family AT1G29340 62.483 0.0 839.0
Ccar14g00025 ACH 6 369 U-box gene family AT4G21350 60.383 3.22e-142 407.0
Ccar11g00816 ACH 366 621 U-box gene family AT3G46510 23.755 7.57e-09 56.6
Ccar11g00469 . 4 410 U-box gene family AT2G35930 54.06 7.59e-162 460.0
Ccar11g00359 . 346 468 U-box gene family AT5G67530 49.593 1.22e-33 134.0
Ccar11g00121 ACH 325 422 U-box gene family AT2G33340 36.634 9.22e-09 55.5
Ccar16g00863 . 1 832 U-box gene family AT2G45910 44.072 0.0 676.0
Ccar16g00833 ACH 544 727 U-box gene family AT2G23140 28.261 2.43e-13 71.2
Ccar16g00753 . 560 742 U-box gene family AT2G23140 37.037 1.38e-21 99.0
Ccar16g00717 . 26 766 U-box gene family AT1G76390 27.141 9.99e-35 140.0
Ccar16g00306 . 308 423 U-box gene family AT2G33340 29.412 7.50e-07 50.4
Ccar16g00308 ACH 541 819 U-box gene family AT2G23140 30.375 1.17e-22 99.8
Ccar7g00673 . 588 711 U-box gene family AT2G23140 41.27 8.80e-11 65.5
Ccar7g00499 ACH 563 819 U-box gene family AT2G23140 37.121 1.77e-37 142.0
Ccar7g00412 ACH 4 828 U-box gene family AT2G23140 53.286 0.0 786.0
Ccar7g00439 . 18 448 U-box gene family AT3G49810 71.991 0.0 608.0
Ccar7g00438 . 18 448 U-box gene family AT3G49810 72.222 0.0 614.0
Ccar7g00329 . 352 493 U-box gene family AT5G67530 45.455 9.55e-31 123.0
Ccar7g00214 . 2 920 U-box gene family AT5G15400 63.715 0.0 1167.0
Ccar7g00117 . 30 538 U-box gene family AT5G40140 50.877 9.07e-159 460.0
Ccar7g00067 . 591 822 U-box gene family AT2G23140 33.195 1.34e-19 86.7
Ccar8g00992 ACH 11 90 U-box gene family AT3G07370 36.25 6.12e-08 52.8
Ccar8g00976 . 603 805 U-box gene family AT2G23140 23.786 5.04e-11 63.9
Ccar8g00776 . 1 421 U-box gene family AT1G49780 66.271 0.0 542.0
Ccar8g00630 . 134 251 U-box gene family AT5G65920 61.017 1.08e-40 138.0
Ccar8g00617 . 350 501 U-box gene family AT5G67530 41.25 5.88e-32 128.0
Ccar8g00185 ACH 240 370 U-box gene family AT1G71020 35.57 2.28e-18 87.8
Ccar9g00979 . 379 475 U-box gene family AT5G67530 40.816 1.49e-13 66.2
Ccar9g00857 ACH 1 276 U-box gene family AT3G07370 58.633 2.60e-118 338.0
Ccar9g00856 ACH 1 460 U-box gene family AT3G07360 56.042 0.0 525.0
Ccar9g00764 . 6 739 U-box gene family AT3G54790 47.517 0.0 542.0
Ccar9g00711 . 357 477 U-box gene family AT5G67530 50.376 9.87e-33 131.0
Ccar9g00673 ACH 212 544 U-box gene family AT1G23030 25.203 1.65e-14 75.1
Ccar9g00440 . 12 635 U-box gene family AT3G46510 67.412 0.0 844.0
Ccar15g01415 ACH 393 711 U-box gene family AT1G24330 27.859 4.26e-25 107.0
Ccar15g00824 ACH 1 768 U-box gene family AT1G27910 59.767 0.0 872.0
Ccar15g00799 ACH 353 491 U-box gene family AT5G67530 39.86 3.89e-22 92.8
Ccar15g00496 ACH 353 481 U-box gene family AT5G67530 47.857 8.15e-31 114.0
Ccar15g00370 . 346 492 U-box gene family AT5G67530 28.75 2.88e-11 60.8
Ccar15g00250 ACH 23 625 U-box gene family AT1G71020 60.841 0.0 683.0
Ccar15g00086 . 346 500 U-box gene family AT5G67530 54.839 4.65e-57 186.0
Ccar15g00011 . 366 621 U-box gene family AT3G46510 24.138 2.41e-09 58.2
Ccar12g01153 . 343 823 U-box gene family AT2G23140 39.676 4.63e-83 271.0
Ccar12g01104 . 439 737 U-box gene family AT1G67530 29.373 1.06e-20 93.2
Ccar12g01096 ACH 1 725 U-box gene family AT1G29340 60.3 0.0 795.0
Ccar12g00934 ACH 527 780 U-box gene family AT2G23140 25.188 6.92e-11 63.2
Ccar12g00738 . 236 519 U-box gene family AT2G33340 31.959 3.44e-35 137.0
Ccar12g00584 . 25 797 U-box gene family AT1G20780 28.68 2.54e-61 223.0
Ccar12g00530 . 112 807 U-box gene family AT1G76390 27.077 7.84e-45 171.0
Ccar4g00725 ACH 542 751 U-box gene family AT2G23140 27.907 5.01e-12 67.0
Ccar4g00397 . 17 216 U-box gene family AT1G27910 37.5 2.00e-30 124.0
Ccar6g00784 . 22 180 U-box gene family AT5G65500 30.0 6.62e-09 53.9
Ccar6g00824 . 10 667 U-box gene family AT1G60190 41.379 1.51e-166 492.0
Ccar6g00443 . 304 449 U-box gene family AT2G33340 29.878 2.50e-09 57.0
Ccar6g00278 . 495 827 U-box gene family AT2G23140 44.611 3.01e-75 245.0
Ccar6g00191 . 2 409 U-box gene family AT5G09800 43.826 1.07e-105 316.0
Ccar10g01353 . 357 492 U-box gene family AT5G67530 41.216 2.30e-20 94.4
Ccar10g01352 . 395 627 U-box gene family AT3G46510 27.119 5.19e-07 49.3
Ccar10g01306 ACH 366 621 U-box gene family AT3G46510 23.571 9.12e-09 56.6
Ccar10g01264 . 192 401 U-box gene family AT1G49780 29.63 2.09e-15 74.7
Ccar10g00841 ACH 353 413 U-box gene family AT2G33340 38.095 1.78e-07 51.6
Ccar10g00741 ACH 47 519 U-box gene family AT1G04510 62.213 0.0 592.0
Ccar10g00572 . 186 431 U-box gene family AT3G52450 31.873 2.68e-32 122.0
Ccar10g00415 . 353 432 U-box gene family AT5G67530 43.82 7.70e-12 65.1
Ccar10g00102 ACH 527 787 U-box gene family AT2G23140 27.206 3.57e-13 70.9
Ccar17g01148 ACH 257 324 U-box gene family AT3G46510 53.623 4.73e-17 84.3
Ccar17g01127 . 834 960 U-box gene family AT2G28830 54.545 4.19e-35 130.0
Ccar17g00861 . 340 501 U-box gene family AT5G67530 46.951 1.65e-40 151.0
Ccar17g00348 . 603 799 U-box gene family AT2G23140 24.623 7.54e-12 66.2
Ccar17g00296 ACH 489 748 U-box gene family AT3G54790 40.37 4.94e-36 136.0
Ccar17g00223 ACH 11 101 U-box gene family AT3G07370 36.264 3.39e-09 56.6
Ccar5g01296 . 1 595 U-box gene family AT5G67530 72.259 0.0 865.0
Ccar5g01242 ACH 563 819 U-box gene family AT2G23140 35.741 9.64e-38 142.0
Ccar5g00802 . 1 656 U-box gene family AT5G01830 55.354 0.0 719.0
Ccar5g00407 . 10 626 U-box gene family AT3G46510 43.402 6.69e-160 472.0
Ccar5g00238 . 136 323 U-box gene family AT3G07360 48.148 8.41e-48 160.0
Ccar5g00237 ACH 7 451 U-box gene family AT3G07360 49.777 5.59e-138 424.0
Ccar5g00239 ACH 1 276 U-box gene family AT3G07370 64.561 6.75e-131 375.0
Ccar5g00088 ACH 565 696 U-box gene family AT2G23140 32.836 2.98e-10 61.6
Ccar13g01742 ACH 53 660 U-box gene family AT5G42340 58.091 0.0 699.0
Ccar13g01696 . 351 491 U-box gene family AT5G67530 33.553 1.21e-12 65.1
Ccar13g01683 ACH 393 477 U-box gene family AT5G67530 52.326 8.57e-20 80.9
Ccar13g01684 ACH 353 477 U-box gene family AT5G67530 47.794 1.40e-30 114.0
Ccar13g01422 . 862 911 U-box gene family AT2G28830 76.0 1.08e-17 79.0
Ccar13g00922 . 347 475 U-box gene family AT5G67530 44.138 2.38e-27 107.0
Ccar13g00625 . 4 807 U-box gene family AT1G76390 62.593 0.0 971.0
Ccar13g00491 . 238 474 U-box gene family AT1G68940 40.336 8.48e-52 179.0
Ccar13g00490 . 936 1017 U-box gene family AT1G68940 45.122 3.73e-20 80.9
Ccar13g00370 ACH 10 607 U-box gene family AT1G23030 62.939 0.0 724.0
Ccar13g00349 . 371 504 U-box gene family AT3G46510 30.935 2.14e-07 52.8
Ccar13g00157 . 7 686 U-box gene family AT1G60190 43.516 0.0 546.0
Ccar13g00051 ACH 1 771 U-box gene family AT1G24330 57.64 0.0 897.0
Ccar3g01797 . 734 805 U-box gene family AT2G28830 40.385 1.20e-13 72.4
Ccar3g01492 ACH 334 509 U-box gene family AT1G23030 28.492 5.81e-14 72.8
Ccar3g01477 . 914 959 U-box gene family AT2G28830 50.0 1.49e-08 47.8
Ccar3g01424 . 233 425 U-box gene family AT2G33340 25.463 1.98e-10 60.8
Ccar3g01079 . 13 80 U-box gene family AT1G67530 54.412 5.62e-18 74.7
Ccar3g01077 . 12 181 U-box gene family AT4G36550 36.683 7.07e-33 132.0
Ccar3g01082 . 18 216 U-box gene family AT1G27910 33.668 4.29e-21 95.5
Ccar3g01080 . 474 655 U-box gene family AT4G36550 38.251 5.38e-21 93.2
Ccar3g00901 . 546 827 U-box gene family AT2G23140 41.343 6.56e-57 195.0
Ccar3g00750 ACH 11 626 U-box gene family AT3G54850 60.227 0.0 705.0
Ccar3g00495 . 43 833 U-box gene family AT2G45910 40.959 0.0 556.0
Ccar3g00426 ACH 5 409 U-box gene family AT5G09800 43.659 5.12e-104 312.0
Ccar3g00279 . 242 598 U-box gene family AT1G23030 27.638 6.90e-19 90.5
Ccar3g00330 . 2 811 U-box gene family AT1G76390 61.111 0.0 984.0
Ccar3g00238 . 353 480 U-box gene family AT5G67530 49.64 2.67e-33 122.0
Ccar3g00019 . 27 807 U-box gene family AT1G76390 22.716 1.78e-29 124.0
Ccar1g02523 . 53 638 U-box gene family AT5G42340 55.085 0.0 611.0
Ccar1g02240 . 8 402 U-box gene family AT2G35930 42.892 3.17e-105 315.0
Ccar1g02160 ACH 5 510 U-box gene family AT2G33340 61.986 0.0 714.0
Ccar1g02015 . 6 410 U-box gene family AT2G35930 48.768 2.26e-143 412.0
Ccar1g01958 . 136 398 U-box gene family AT3G07360 50.379 2.48e-79 245.0
Ccar1g01915 . 346 496 U-box gene family AT5G67530 50.993 4.02e-53 175.0
Ccar1g01910 . 4 410 U-box gene family AT2G35930 54.098 1.92e-161 459.0
Ccar1g01657 . 440 696 U-box gene family AT5G67340 25.974 1.34e-09 61.6
Ccar1g01621 . 1 435 U-box gene family AT5G37490 45.0 1.74e-126 371.0
Ccar1g01572 . 20 489 U-box gene family AT5G65500 39.877 7.02e-102 327.0
Ccar1g01400 . 10 670 U-box gene family AT4G36550 37.233 3.64e-127 393.0
Ccar1g01295 . 1 444 U-box gene family AT5G65920 68.764 0.0 618.0
Ccar1g01271 ACH 4 829 U-box gene family AT2G23140 53.8 0.0 815.0
Ccar1g00790 . 242 477 U-box gene family AT1G68940 29.268 3.05e-15 79.0
Ccar1g00526 ACH 11 626 U-box gene family AT3G54850 64.448 0.0 767.0
Ccar1g00293 . 6 635 U-box gene family AT3G46510 38.507 2.61e-128 393.0
Ccar1g00162 . 348 835 U-box gene family AT4G25160 61.885 0.0 644.0
Ccar1g00052 . 9 102 U-box gene family AT3G07370 28.723 1.39e-07 50.4
Ccar1g00007 ACH 260 513 U-box gene family AT1G04510 23.574 2.57e-06 48.9
Ccar2g02126 . 581 654 U-box gene family AT2G23140 42.667 2.18e-07 51.6
Ccar2g02067 ACH 2 101 U-box gene family AT3G07370 37.0 4.75e-09 56.2
Ccar2g01948 ACH 489 749 U-box gene family AT3G54790 39.483 4.24e-36 137.0
Ccar2g01783 . 352 494 U-box gene family AT5G67530 43.226 1.69e-31 125.0
Ccar2g01767 . 1 421 U-box gene family AT1G49780 66.033 0.0 534.0
Ccar2g00592 . 45 830 U-box gene family AT2G45910 33.253 2.78e-139 431.0
Ccar2g00588 . 2 635 U-box gene family AT3G46510 65.142 0.0 801.0
Ccar2g00538 . 262 465 U-box gene family AT2G33340 24.901 5.45e-10 58.5
Ccar2g00283 ACH 1 459 U-box gene family AT3G07360 51.789 3.11e-164 470.0