AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ccar2g02127 ATGGATCAGAATCTACGGTTTTCTGTTCATACGCTAGAGACTGCTGACAATTCATCTTCTTCAGTTGGTTTCTCCCCAAGTGGCAGTCCCGTTTCGCTTCAAGATTCTCACTCGTTCCAACCAGGCCTGTATCATTCCCCTGATCAGACTTACACCTCTCACATAAATCCGGCTGCAGGCAATGTGGATGAGTTGGAGTTGAGGCTGAGAGAATTAGAAGCGGCTATGTTGGGAAGCGATCAAGATTTTGAAGAGTTTGATGTTTCATCTTCGTGGGATGGGTATGGACCGGAGGATATAAATCAAGAAAACGATGAATTTAGAATAATGGAAGAGTTGACTTCTAGAGGAGACCTGAAACAAGCCCTTCTTGCTTGTGCTAAAGCCATAGCTGAAAACAAGTTAACAACTGCTGAACAGGAACAGCTTATATCAATGGCACGTCCATTGGTGTCGGTATCCGGTGAGCCTGCACAGAGATTAGGAGCTTACATGTTGGAAGGGCTTGCAGCAAGAATATATGAATCAGGTAGCATTATCTACAAAACCCTAAAGTGCAAAGAGCCAACTAGTGGTGAGCTTCTATCTTATATGCTTTTGCTCTATGAAGCCTGTCCCTATTTCAAGTTTGGTTACTTGTCGGCAAATGGAGCCATTGCTGAAGCCACAAAAAACGAAGATAGAATCCATATAGTCGATTTCCAGATAGCACAGGGCGGTCAATGGGTAACTCTCATCCAGGCTCTTGCGGCTCGGCCTGGTGGGCCCCCGAAGCTACGCATCACTGGTATCGATGATCCCAGAAACAATTACGCTAGAGGTGGAGGGCTGAATATCGTTGGGCGGAGACTAGAGATGCTAGCTGAATCTTGTAAAGTTCCCTTTGAATTCCATGGTGTGCCTGTTTCTGGTTCCGACATTCAGATTGAACATCTTGGGGTTCGGCCAGGGGAGGCGTTGGCTGTTAATTGCGCGTTTGTGCTGCATCATATGCCAGATGAGAGTGTGGATCCCCGGAATCATAGGGACAGATTGTTGAGGCTGATCAAGAGTCTGTCTCCAAAAGTTGTGACTCTTGTGGAACAAGAAGCCAATGTGAACACAGCACTATTCTTTCACAGGTTTCAAGAGGCGTTCAGCTACTATTCAGCTATGTTCGAATCGATTGATGCGACTCTAGAAAGGGATCATAGAGAGCGAATCAATATCGAGAAACATTGTCTAGCTGGTGAGATAGTTAATATAATAGCGTGTGAAGGGACCGAAAGGGAGGAAAGACATGAGCTTCTTGGGAAGTGGAAGACGCGGTTTAGAATGGCTGGATTCAGTCCGTACCCTCTAAGCTCGTACGTGAATGCCACCATTAAGACGCTGCTCGAGAACTACTGCGATAGATATAGACTCCAAGAACGAGATGGGGCTCTGTTTCTTGGATGGATGAACCGAGATTTGGTCTCATCCTGTGCATGGAAATGA 1476 46.0 MDQNLRFSVHTLETADNSSSSVGFSPSGSPVSLQDSHSFQPGLYHSPDQTYTSHINPAAGNVDELELRLRELEAAMLGSDQDFEEFDVSSSWDGYGPEDINQENDEFRIMEELTSRGDLKQALLACAKAIAENKLTTAEQEQLISMARPLVSVSGEPAQRLGAYMLEGLAARIYESGSIIYKTLKCKEPTSGELLSYMLLLYEACPYFKFGYLSANGAIAEATKNEDRIHIVDFQIAQGGQWVTLIQALAARPGGPPKLRITGIDDPRNNYARGGGLNIVGRRLEMLAESCKVPFEFHGVPVSGSDIQIEHLGVRPGEALAVNCAFVLHHMPDESVDPRNHRDRLLRLIKSLSPKVVTLVEQEANVNTALFFHRFQEAFSYYSAMFESIDATLERDHRERINIEKHCLAGEIVNIIACEGTEREERHELLGKWKTRFRMAGFSPYPLSSYVNATIKTLLENYCDRYRLQERDGALFLGWMNRDLVSSCAWK 491
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ccar2g02127 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 112 490 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Ccar2g02127 491 Pfam GRAS domain family 119 491 IPR005202 -
Ccar2g02127 491 MobiDBLite consensus disorder prediction 16 48 - -
Ccar2g02127 491 Coils Coil 55 82 - -
Ccar2g02127 491 ProSiteProfiles GRAS family profile. 110 491 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ccar2g02127 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ccar Ccar-Chr2:68502229 Ccar8g00896 Ccar-Chr8:22750581 dispersed
Ccar Ccar-Chr12:34906531 Ccar2g02127 Ccar-Chr2:68502229 transposed
Ccar Ccar-Chr2:69129407 Ccar2g02127 Ccar-Chr2:68502229 transposed
Ccar Ccar-Chr4:2311937 Ccar2g02127 Ccar-Chr2:68502229 transposed
Ccar Ccar-Chr6:17737588 Ccar2g02127 Ccar-Chr2:68502229 transposed
Ccar Ccar-Chr2:68502229 Ccar6g00507 Ccar-Chr6:15668480 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ccar14g00416 ACH 187 555 GRAS Transcription Factor family AT4G00150 60.881 5.70e-151 447.0
Ccar11g00981 . 1 654 GRAS Transcription Factor family AT1G63100 51.814 0.0 588.0
Ccar11g00828 . 153 546 GRAS Transcription Factor family AT3G03450 28.675 1.99e-52 191.0
Ccar11g00885 . 129 555 GRAS Transcription Factor family AT4G00150 41.631 9.27e-103 324.0
Ccar16g00778 ACH 87 555 GRAS Transcription Factor family AT4G00150 44.463 4.95e-147 439.0
Ccar7g00430 ACH 131 530 GRAS Transcription Factor family AT4G37650 57.357 1.69e-161 462.0
Ccar7g00005 . 172 545 GRAS Transcription Factor family AT3G03450 43.75 6.73e-99 313.0
Ccar8g01149 ACH 9 510 GRAS Transcription Factor family AT3G13840 49.427 2.04e-157 457.0
Ccar8g00896 . 60 490 GRAS Transcription Factor family AT5G48150 64.908 0.0 581.0
Ccar8g00821 . 135 507 GRAS Transcription Factor family AT1G66350 30.0 1.27e-54 190.0
Ccar9g00427 . 20 740 GRAS Transcription Factor family AT1G07530 48.033 0.0 606.0
Ccar9g00423 ACH 357 767 GRAS Transcription Factor family AT1G07530 53.285 5.65e-162 480.0
Ccar9g00238 . 159 545 GRAS Transcription Factor family AT3G03450 24.372 3.85e-23 100.0
Ccar9g00237 . 118 544 GRAS Transcription Factor family AT3G03450 24.545 1.57e-20 93.2
Ccar15g00995 . 205 555 GRAS Transcription Factor family AT4G00150 47.326 9.04e-102 320.0
Ccar15g00291 . 26 582 GRAS Transcription Factor family AT2G01570 56.195 0.0 609.0
Ccar12g01269 . 6 409 GRAS Transcription Factor family AT3G49950 44.153 8.86e-121 356.0
Ccar12g01151 . 1 525 GRAS Transcription Factor family AT4G17230 54.955 0.0 563.0
Ccar12g00219 . 35 582 GRAS Transcription Factor family AT2G01570 63.811 0.0 696.0
Ccar12g00135 . 13 405 GRAS Transcription Factor family AT5G41920 66.256 0.0 520.0
Ccar4g00048 . 18 593 GRAS Transcription Factor family AT1G21450 55.219 0.0 608.0
Ccar4g00028 . 154 511 GRAS Transcription Factor family AT5G17490 33.419 5.82e-47 167.0
Ccar6g00751 ACH 161 529 GRAS Transcription Factor family AT1G14920 35.038 5.51e-71 234.0
Ccar6g00670 . 41 490 GRAS Transcription Factor family AT5G48150 63.974 0.0 593.0
Ccar6g00507 . 41 424 GRAS Transcription Factor family AT1G55580 47.549 5.60e-110 331.0
Ccar10g01038 . 37 486 GRAS Transcription Factor family AT4G36710 50.216 1.14e-136 402.0
Ccar10g00293 . 1 479 GRAS Transcription Factor family AT1G50420 62.63 0.0 603.0
Ccar17g00024 . 40 444 GRAS Transcription Factor family AT1G55580 49.881 1.70e-123 365.0
Ccar5g01306 . 12 409 GRAS Transcription Factor family AT3G49950 62.228 0.0 523.0
Ccar5g01295 ACH 1 530 GRAS Transcription Factor family AT4G37650 56.577 0.0 563.0
Ccar5g01271 . 37 485 GRAS Transcription Factor family AT4G36710 50.847 1.17e-141 415.0
Ccar5g01179 . 69 584 GRAS Transcription Factor family AT5G66770 59.273 0.0 577.0
Ccar5g00813 . 250 651 GRAS Transcription Factor family AT3G54220 81.235 0.0 658.0
Ccar5g00654 . 73 715 GRAS Transcription Factor family AT2G37650 50.805 0.0 641.0
Ccar5g00396 ACH 25 767 GRAS Transcription Factor family AT1G07530 48.936 0.0 661.0
Ccar13g01094 ACH 35 640 GRAS Transcription Factor family AT5G52510 46.508 5.93e-146 436.0
Ccar13g00873 . 86 767 GRAS Transcription Factor family AT1G07530 46.599 0.0 580.0
Ccar13g00353 . 14 530 GRAS Transcription Factor family AT1G14920 65.434 0.0 699.0
Ccar3g01776 ACH 14 510 GRAS Transcription Factor family AT3G13840 48.047 4.25e-149 434.0
Ccar3g01412 ACH 165 529 GRAS Transcription Factor family AT1G14920 35.325 5.79e-71 235.0
Ccar1g02235 . 4 482 GRAS Transcription Factor family AT1G50420 66.528 0.0 642.0
Ccar1g01596 . 23 529 GRAS Transcription Factor family AT1G14920 62.983 0.0 669.0
Ccar1g01367 . 37 486 GRAS Transcription Factor family AT4G36710 49.241 5.44e-136 400.0
Ccar1g01301 ACH 118 530 GRAS Transcription Factor family AT4G37650 59.472 2.69e-178 509.0
Ccar1g00390 . 86 749 GRAS Transcription Factor family AT1G07530 44.048 0.0 535.0
Ccar1g00070 ACH 29 640 GRAS Transcription Factor family AT5G52510 42.654 4.18e-130 395.0
Ccar2g02316 . 171 522 GRAS Transcription Factor family AT3G03450 33.957 7.18e-58 200.0
Ccar2g02275 . 40 444 GRAS Transcription Factor family AT1G55580 48.78 1.28e-115 343.0
Ccar2g02199 . 118 489 GRAS Transcription Factor family AT5G48150 63.539 5.98e-172 494.0
Ccar2g02127 . 155 597 GRAS Transcription Factor family AT1G50600 62.0 0.0 568.0
Ccar2g01902 . 34 490 GRAS Transcription Factor family AT5G48150 62.069 0.0 579.0
Ccar2g01160 . 209 584 GRAS Transcription Factor family AT5G66770 29.949 5.47e-26 108.0
Ccar2g00605 ACH 435 767 GRAS Transcription Factor family AT1G07530 58.084 4.32e-141 428.0
Ccar2g00365 . 430 714 GRAS Transcription Factor family AT2G37650 65.854 6.55e-137 414.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ccar GRAS 7.1e-133 CL0063 TF GRAS